Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20325 and ABZR87_RS20330 are separated by 18 nucleotides ABZR87_RS20330 and ABZR87_RS20335 are separated by 100 nucleotides
ABZR87_RS20325: ABZR87_RS20325 - enolase C-terminal domain-like protein, at 948,233 to 949,642
_RS20325
ABZR87_RS20330: ABZR87_RS20330 - MFS transporter, at 949,661 to 951,013
_RS20330
ABZR87_RS20335: ABZR87_RS20335 - aldehyde dehydrogenase (NADP(+)), at 951,114 to 952,685
_RS20335
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 948.801 kb on + strand, within ABZR87_RS20325 at 948.801 kb on + strand, within ABZR87_RS20325 at 948.802 kb on - strand, within ABZR87_RS20325 at 948.978 kb on + strand, within ABZR87_RS20325 at 948.979 kb on - strand, within ABZR87_RS20325 at 949.116 kb on + strand, within ABZR87_RS20325 at 949.116 kb on + strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.125 kb on + strand, within ABZR87_RS20325 at 949.125 kb on + strand, within ABZR87_RS20325 at 949.384 kb on + strand, within ABZR87_RS20325 at 949.384 kb on + strand, within ABZR87_RS20325 at 949.385 kb on - strand, within ABZR87_RS20325 at 949.385 kb on - strand, within ABZR87_RS20325 at 949.385 kb on - strand, within ABZR87_RS20325 at 949.513 kb on + strand at 949.644 kb on + strand at 949.644 kb on + strand at 949.645 kb on - strand at 949.662 kb on + strand at 949.711 kb on - strand at 949.711 kb on - strand at 949.746 kb on + strand at 949.747 kb on - strand at 949.788 kb on + strand at 949.788 kb on + strand at 949.788 kb on + strand at 949.789 kb on - strand at 949.971 kb on + strand, within ABZR87_RS20330 at 949.972 kb on - strand, within ABZR87_RS20330 at 949.972 kb on - strand, within ABZR87_RS20330 at 949.972 kb on - strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on - strand, within ABZR87_RS20330 at 950.220 kb on + strand, within ABZR87_RS20330 at 950.220 kb on + strand, within ABZR87_RS20330 at 950.221 kb on - strand, within ABZR87_RS20330 at 950.232 kb on + strand, within ABZR87_RS20330 at 950.233 kb on - strand, within ABZR87_RS20330 at 950.274 kb on + strand, within ABZR87_RS20330 at 950.320 kb on + strand, within ABZR87_RS20330 at 950.320 kb on + strand, within ABZR87_RS20330 at 950.321 kb on - strand, within ABZR87_RS20330 at 950.321 kb on - strand, within ABZR87_RS20330 at 950.349 kb on + strand, within ABZR87_RS20330 at 950.350 kb on - strand, within ABZR87_RS20330 at 950.450 kb on - strand, within ABZR87_RS20330 at 950.450 kb on - strand, within ABZR87_RS20330 at 950.450 kb on - strand, within ABZR87_RS20330 at 950.674 kb on + strand, within ABZR87_RS20330 at 950.736 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.797 kb on - strand, within ABZR87_RS20330 at 950.823 kb on + strand, within ABZR87_RS20330 at 950.901 kb on + strand at 950.901 kb on + strand at 950.901 kb on + strand at 950.901 kb on + strand at 950.920 kb on + strand at 950.921 kb on - strand at 951.097 kb on - strand at 951.205 kb on + strand at 951.559 kb on + strand, within ABZR87_RS20335 at 951.559 kb on + strand, within ABZR87_RS20335 at 951.560 kb on - strand, within ABZR87_RS20335 at 951.560 kb on - strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.783 kb on - strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.901 kb on + strand, within ABZR87_RS20335 at 951.902 kb on - strand, within ABZR87_RS20335 at 951.902 kb on - strand, within ABZR87_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 948,801 + ABZR87_RS20325 0.40 -1.2 948,801 + ABZR87_RS20325 0.40 +0.1 948,802 - ABZR87_RS20325 0.40 -1.6 948,978 + ABZR87_RS20325 0.53 -0.6 948,979 - ABZR87_RS20325 0.53 -2.2 949,116 + ABZR87_RS20325 0.63 -1.9 949,116 + ABZR87_RS20325 0.63 -0.4 949,117 - ABZR87_RS20325 0.63 -1.6 949,117 - ABZR87_RS20325 0.63 -0.9 949,117 - ABZR87_RS20325 0.63 -0.3 949,125 + ABZR87_RS20325 0.63 -0.0 949,125 + ABZR87_RS20325 0.63 -1.1 949,384 + ABZR87_RS20325 0.82 -0.2 949,384 + ABZR87_RS20325 0.82 -0.8 949,385 - ABZR87_RS20325 0.82 +0.2 949,385 - ABZR87_RS20325 0.82 -0.5 949,385 - ABZR87_RS20325 0.82 -0.5 949,513 + -0.7 949,644 + +0.0 949,644 + -0.9 949,645 - -0.4 949,662 + -0.7 949,711 - -0.4 949,711 - +0.2 949,746 + +1.6 949,747 - +0.2 949,788 + -1.3 949,788 + -0.4 949,788 + -0.9 949,789 - +0.4 949,971 + ABZR87_RS20330 0.23 -0.3 949,972 - ABZR87_RS20330 0.23 -0.5 949,972 - ABZR87_RS20330 0.23 -0.0 949,972 - ABZR87_RS20330 0.23 -0.6 950,172 + ABZR87_RS20330 0.38 +0.1 950,172 + ABZR87_RS20330 0.38 -0.4 950,172 + ABZR87_RS20330 0.38 +0.1 950,172 + ABZR87_RS20330 0.38 +0.2 950,172 - ABZR87_RS20330 0.38 +0.1 950,220 + ABZR87_RS20330 0.41 +0.2 950,220 + ABZR87_RS20330 0.41 -0.6 950,221 - ABZR87_RS20330 0.41 -0.4 950,232 + ABZR87_RS20330 0.42 -1.9 950,233 - ABZR87_RS20330 0.42 -0.5 950,274 + ABZR87_RS20330 0.45 +0.7 950,320 + ABZR87_RS20330 0.49 -0.6 950,320 + ABZR87_RS20330 0.49 -1.2 950,321 - ABZR87_RS20330 0.49 +0.8 950,321 - ABZR87_RS20330 0.49 -0.9 950,349 + ABZR87_RS20330 0.51 +0.1 950,350 - ABZR87_RS20330 0.51 -1.9 950,450 - ABZR87_RS20330 0.58 -0.9 950,450 - ABZR87_RS20330 0.58 -0.4 950,450 - ABZR87_RS20330 0.58 -0.2 950,674 + ABZR87_RS20330 0.75 +1.8 950,736 + ABZR87_RS20330 0.79 -1.1 950,796 + ABZR87_RS20330 0.84 +0.2 950,796 + ABZR87_RS20330 0.84 -0.7 950,796 + ABZR87_RS20330 0.84 +0.2 950,796 + ABZR87_RS20330 0.84 -1.0 950,797 - ABZR87_RS20330 0.84 -0.7 950,823 + ABZR87_RS20330 0.86 +0.3 950,901 + +0.8 950,901 + +1.3 950,901 + +3.3 950,901 + -0.6 950,920 + +1.5 950,921 - -0.2 951,097 - -0.0 951,205 + +0.9 951,559 + ABZR87_RS20335 0.28 -0.2 951,559 + ABZR87_RS20335 0.28 -0.3 951,560 - ABZR87_RS20335 0.28 -0.6 951,560 - ABZR87_RS20335 0.28 -1.5 951,658 + ABZR87_RS20335 0.35 +0.8 951,658 + ABZR87_RS20335 0.35 +0.1 951,658 + ABZR87_RS20335 0.35 +0.6 951,658 + ABZR87_RS20335 0.35 +0.3 951,783 - ABZR87_RS20335 0.43 +0.6 951,820 + ABZR87_RS20335 0.45 -0.1 951,820 + ABZR87_RS20335 0.45 +0.1 951,820 + ABZR87_RS20335 0.45 +2.4 951,821 - ABZR87_RS20335 0.45 +0.6 951,821 - ABZR87_RS20335 0.45 +0.2 951,821 - ABZR87_RS20335 0.45 +1.4 951,901 + ABZR87_RS20335 0.50 -0.9 951,902 - ABZR87_RS20335 0.50 -0.5 951,902 - ABZR87_RS20335 0.50 -0.1
Or see this region's nucleotide sequence