Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19265 and ABZR87_RS19270 are separated by 307 nucleotides ABZR87_RS19270 and ABZR87_RS19275 are separated by 43 nucleotides ABZR87_RS19275 and ABZR87_RS19280 are separated by 79 nucleotides
ABZR87_RS19265: ABZR87_RS19265 - LuxR family transcriptional regulator, at 683,575 to 684,423
_RS19265
ABZR87_RS19270: ABZR87_RS19270 - FHIPEP family type III secretion protein, at 684,731 to 686,686
_RS19270
ABZR87_RS19275: ABZR87_RS19275 - type III secretion system export apparatus subunit SctS, at 686,730 to 687,005
_RS19275
ABZR87_RS19280: ABZR87_RS19280 - type III secretion system outer membrane ring subunit SctC, at 687,085 to 688,956
_RS19280
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 683.837 kb on + strand, within ABZR87_RS19265 at 684.104 kb on + strand, within ABZR87_RS19265 at 684.105 kb on - strand, within ABZR87_RS19265 at 684.119 kb on + strand, within ABZR87_RS19265 at 684.147 kb on - strand, within ABZR87_RS19265 at 684.175 kb on - strand, within ABZR87_RS19265 at 684.203 kb on + strand, within ABZR87_RS19265 at 684.203 kb on + strand, within ABZR87_RS19265 at 684.461 kb on + strand at 684.489 kb on - strand at 684.578 kb on + strand at 684.578 kb on + strand at 684.623 kb on + strand at 684.755 kb on + strand at 684.756 kb on - strand at 684.756 kb on - strand at 684.874 kb on - strand at 684.880 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.825 kb on - strand, within ABZR87_RS19270 at 685.825 kb on - strand, within ABZR87_RS19270 at 686.059 kb on + strand, within ABZR87_RS19270 at 686.574 kb on - strand at 686.624 kb on + strand at 686.982 kb on + strand at 686.983 kb on - strand at 687.045 kb on + strand at 687.046 kb on - strand at 687.046 kb on - strand at 687.046 kb on - strand at 687.175 kb on + strand at 687.175 kb on + strand at 687.176 kb on - strand at 687.334 kb on + strand, within ABZR87_RS19280 at 687.335 kb on - strand, within ABZR87_RS19280 at 687.349 kb on + strand, within ABZR87_RS19280 at 687.349 kb on + strand, within ABZR87_RS19280 at 687.349 kb on + strand, within ABZR87_RS19280 at 687.352 kb on + strand, within ABZR87_RS19280 at 687.352 kb on + strand, within ABZR87_RS19280 at 687.371 kb on - strand, within ABZR87_RS19280 at 687.515 kb on - strand, within ABZR87_RS19280 at 687.535 kb on + strand, within ABZR87_RS19280 at 687.536 kb on - strand, within ABZR87_RS19280 at 687.536 kb on - strand, within ABZR87_RS19280 at 687.625 kb on + strand, within ABZR87_RS19280 at 687.625 kb on + strand, within ABZR87_RS19280 at 687.626 kb on - strand, within ABZR87_RS19280 at 687.626 kb on - strand, within ABZR87_RS19280 at 687.626 kb on - strand, within ABZR87_RS19280
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 683,837 + ABZR87_RS19265 0.31 -0.6 684,104 + ABZR87_RS19265 0.62 -0.3 684,105 - ABZR87_RS19265 0.62 +0.7 684,119 + ABZR87_RS19265 0.64 -1.5 684,147 - ABZR87_RS19265 0.67 +0.9 684,175 - ABZR87_RS19265 0.71 -0.8 684,203 + ABZR87_RS19265 0.74 -1.3 684,203 + ABZR87_RS19265 0.74 +0.6 684,461 + -1.1 684,489 - +0.2 684,578 + +0.8 684,578 + +0.2 684,623 + +2.0 684,755 + -0.2 684,756 - +1.2 684,756 - +0.3 684,874 - -0.4 684,880 - +0.4 684,888 - +0.2 684,888 - -0.4 684,888 - +0.0 684,888 - -0.0 684,888 - +0.7 685,824 + ABZR87_RS19270 0.56 +0.4 685,824 + ABZR87_RS19270 0.56 +0.2 685,824 + ABZR87_RS19270 0.56 +0.5 685,824 + ABZR87_RS19270 0.56 -0.6 685,824 + ABZR87_RS19270 0.56 -0.3 685,825 - ABZR87_RS19270 0.56 +1.8 685,825 - ABZR87_RS19270 0.56 -0.4 686,059 + ABZR87_RS19270 0.68 +0.9 686,574 - -0.5 686,624 + +1.3 686,982 + +0.3 686,983 - +1.0 687,045 + -1.0 687,046 - +0.1 687,046 - +0.9 687,046 - -0.2 687,175 + +0.6 687,175 + -0.8 687,176 - -0.5 687,334 + ABZR87_RS19280 0.13 +0.5 687,335 - ABZR87_RS19280 0.13 -0.4 687,349 + ABZR87_RS19280 0.14 -0.0 687,349 + ABZR87_RS19280 0.14 +0.5 687,349 + ABZR87_RS19280 0.14 -0.8 687,352 + ABZR87_RS19280 0.14 -2.2 687,352 + ABZR87_RS19280 0.14 +0.3 687,371 - ABZR87_RS19280 0.15 -0.5 687,515 - ABZR87_RS19280 0.23 -1.4 687,535 + ABZR87_RS19280 0.24 +0.8 687,536 - ABZR87_RS19280 0.24 +0.8 687,536 - ABZR87_RS19280 0.24 -1.5 687,625 + ABZR87_RS19280 0.29 -0.8 687,625 + ABZR87_RS19280 0.29 -1.1 687,626 - ABZR87_RS19280 0.29 +0.8 687,626 - ABZR87_RS19280 0.29 -0.4 687,626 - ABZR87_RS19280 0.29 +0.6
Or see this region's nucleotide sequence