Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19000 and ABZR87_RS19005 are separated by 650 nucleotides ABZR87_RS19005 and ABZR87_RS19010 are separated by 79 nucleotides ABZR87_RS19010 and ABZR87_RS19015 are separated by 301 nucleotides
ABZR87_RS19000: ABZR87_RS19000 - hypothetical protein, at 620,098 to 620,580
_RS19000
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
ABZR87_RS19010: ABZR87_RS19010 - acyloxyacyl hydrolase, at 622,657 to 623,220
_RS19010
ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027
_RS19015
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.403 kb on - strand, within ABZR87_RS19000 at 620.505 kb on + strand, within ABZR87_RS19000 at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.647 kb on - strand at 620.647 kb on - strand at 620.648 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.662 kb on - strand at 620.812 kb on + strand at 620.813 kb on - strand at 620.838 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.019 kb on + strand at 621.020 kb on - strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.281 kb on - strand at 621.416 kb on + strand, within ABZR87_RS19005 at 621.416 kb on + strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.660 kb on - strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.395 kb on + strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.507 kb on - strand at 622.583 kb on + strand at 622.667 kb on + strand at 622.668 kb on - strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.745 kb on + strand, within ABZR87_RS19010 at 623.075 kb on + strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.429 kb on + strand at 623.429 kb on + strand at 623.429 kb on + strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.431 kb on + strand at 623.432 kb on - strand at 623.441 kb on + strand at 623.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 620,289 + ABZR87_RS19000 0.40 +0.9 620,289 + ABZR87_RS19000 0.40 +1.4 620,402 + ABZR87_RS19000 0.63 +1.2 620,402 + ABZR87_RS19000 0.63 -0.1 620,403 - ABZR87_RS19000 0.63 +0.0 620,505 + ABZR87_RS19000 0.84 +0.8 620,580 + +1.6 620,580 + +1.7 620,580 + +0.9 620,580 + +0.4 620,580 + +1.9 620,580 + +1.7 620,580 + +1.1 620,581 - -0.4 620,581 - +1.0 620,581 - -1.8 620,581 - +1.2 620,647 - +0.4 620,647 - +0.1 620,648 + +1.0 620,658 + +2.3 620,658 + +1.4 620,658 + +1.6 620,658 + +2.6 620,658 + +2.0 620,658 + +1.8 620,658 + +1.4 620,658 + +3.4 620,659 - -0.2 620,659 - +0.5 620,659 - -0.2 620,659 - -0.3 620,659 - -0.9 620,659 - +1.2 620,661 + +1.8 620,661 + +0.8 620,661 + +2.1 620,662 - -1.1 620,812 + +2.7 620,813 - -2.1 620,838 + +1.2 621,017 + +2.3 621,017 + +3.4 621,017 + +3.0 621,017 + +1.7 621,017 + +2.4 621,017 + +1.5 621,017 + +1.4 621,018 - -0.6 621,018 - +0.5 621,018 - -1.4 621,018 - -0.6 621,018 - +0.4 621,019 + +2.2 621,020 - -0.7 621,252 + +0.4 621,252 + +0.4 621,252 + -0.2 621,252 + +0.2 621,252 + -0.6 621,252 + -0.3 621,252 + +0.2 621,252 + -0.2 621,252 + +0.5 621,253 - +0.2 621,253 - -0.2 621,253 - -0.4 621,253 - -0.3 621,253 - +0.4 621,253 - +0.0 621,253 - +0.6 621,253 - -0.5 621,253 - +1.3 621,253 - -0.2 621,253 - +0.3 621,253 - -0.7 621,253 - -0.2 621,253 - +0.5 621,254 + -0.2 621,254 + +0.9 621,254 + -0.3 621,255 - -1.0 621,255 - +0.0 621,255 - +0.5 621,255 - +0.6 621,281 - -0.8 621,416 + ABZR87_RS19005 0.14 +0.1 621,416 + ABZR87_RS19005 0.14 -0.5 621,417 - ABZR87_RS19005 0.14 +0.5 621,417 - ABZR87_RS19005 0.14 +0.9 621,417 - ABZR87_RS19005 0.14 +0.4 621,417 - ABZR87_RS19005 0.14 -1.3 621,417 - ABZR87_RS19005 0.14 +0.1 621,417 - ABZR87_RS19005 0.14 -0.5 621,497 + ABZR87_RS19005 0.20 -0.4 621,497 + ABZR87_RS19005 0.20 -1.1 621,633 + ABZR87_RS19005 0.30 +0.5 621,633 + ABZR87_RS19005 0.30 -1.5 621,633 + ABZR87_RS19005 0.30 +1.2 621,633 + ABZR87_RS19005 0.30 -0.2 621,633 + ABZR87_RS19005 0.30 -0.7 621,633 + ABZR87_RS19005 0.30 -0.4 621,634 - ABZR87_RS19005 0.30 -1.1 621,634 - ABZR87_RS19005 0.30 -2.0 621,634 - ABZR87_RS19005 0.30 -0.9 621,634 - ABZR87_RS19005 0.30 -1.4 621,634 - ABZR87_RS19005 0.30 -0.5 621,634 - ABZR87_RS19005 0.30 +0.1 621,659 + ABZR87_RS19005 0.32 -2.9 621,659 + ABZR87_RS19005 0.32 -0.2 621,659 + ABZR87_RS19005 0.32 -0.2 621,660 - ABZR87_RS19005 0.32 -1.6 621,765 + ABZR87_RS19005 0.40 +0.5 621,765 + ABZR87_RS19005 0.40 -1.1 621,813 + ABZR87_RS19005 0.43 -1.4 621,813 + ABZR87_RS19005 0.43 -0.3 621,814 - ABZR87_RS19005 0.43 +0.4 621,814 - ABZR87_RS19005 0.43 -0.1 621,822 - ABZR87_RS19005 0.44 -0.3 621,822 - ABZR87_RS19005 0.44 +0.3 622,155 + ABZR87_RS19005 0.69 -0.5 622,155 + ABZR87_RS19005 0.69 +0.0 622,155 + ABZR87_RS19005 0.69 +0.2 622,155 + ABZR87_RS19005 0.69 +1.0 622,156 - ABZR87_RS19005 0.69 +0.3 622,156 - ABZR87_RS19005 0.69 -2.0 622,395 + ABZR87_RS19005 0.86 -1.0 622,396 - ABZR87_RS19005 0.86 -0.3 622,396 - ABZR87_RS19005 0.86 -0.7 622,452 + -0.3 622,452 + +0.7 622,452 + -0.4 622,452 + -0.1 622,452 + -0.7 622,452 + +1.5 622,453 - +0.2 622,453 - -0.6 622,453 - -0.2 622,506 + -0.6 622,506 + -0.2 622,506 + +0.7 622,506 + -1.0 622,507 - +0.3 622,583 + -1.9 622,667 + -1.0 622,668 - +0.9 622,676 + +1.1 622,676 + -0.4 622,676 + +1.5 622,676 + +1.0 622,677 - +0.5 622,677 - +0.3 622,677 - +2.2 622,745 + ABZR87_RS19010 0.16 +1.2 623,075 + ABZR87_RS19010 0.74 -1.2 623,076 - ABZR87_RS19010 0.74 +0.6 623,076 - ABZR87_RS19010 0.74 +1.9 623,108 + ABZR87_RS19010 0.80 +1.3 623,108 + ABZR87_RS19010 0.80 +1.1 623,429 + +0.4 623,429 + +0.7 623,429 + +0.5 623,430 - +0.5 623,430 - +0.4 623,430 - +0.8 623,430 - +0.1 623,430 - -0.3 623,430 - -1.6 623,430 - -1.7 623,430 - +1.4 623,431 + +0.2 623,432 - -0.2 623,441 + +2.1 623,442 - +0.1
Or see this region's nucleotide sequence