Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18640

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18635 and ABZR87_RS18640 are separated by 29 nucleotidesABZR87_RS18640 and ABZR87_RS18645 are separated by 100 nucleotidesABZR87_RS18645 and ABZR87_RS18650 are separated by 141 nucleotidesABZR87_RS18650 and ABZR87_RS18655 are separated by 81 nucleotides ABZR87_RS18635: ABZR87_RS18635 - multidrug transporter subunit MdtD, at 533,412 to 534,842 _RS18635 ABZR87_RS18640: ABZR87_RS18640 - ATP-dependent helicase, at 534,872 to 537,022 _RS18640 ABZR87_RS18645: ABZR87_RS18645 - hypothetical protein, at 537,123 to 537,449 _RS18645 ABZR87_RS18650: ABZR87_RS18650 - YnfA family protein, at 537,591 to 537,923 _RS18650 ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952 _RS18655 Position (kb) 534 535 536 537 538Strain fitness (log2 ratio) -2 -1 0 1 2at 534.310 kb on - strand, within ABZR87_RS18635at 534.310 kb on - strand, within ABZR87_RS18635at 534.400 kb on - strand, within ABZR87_RS18635at 534.403 kb on + strand, within ABZR87_RS18635at 534.403 kb on + strand, within ABZR87_RS18635at 534.554 kb on + strand, within ABZR87_RS18635at 534.554 kb on + strand, within ABZR87_RS18635at 534.555 kb on - strand, within ABZR87_RS18635at 535.029 kb on + strandat 535.030 kb on - strandat 535.030 kb on - strandat 535.030 kb on - strandat 535.030 kb on - strandat 535.030 kb on - strandat 535.068 kb on + strandat 535.069 kb on - strandat 535.069 kb on - strandat 535.126 kb on - strand, within ABZR87_RS18640at 535.126 kb on - strand, within ABZR87_RS18640at 535.212 kb on + strand, within ABZR87_RS18640at 535.212 kb on + strand, within ABZR87_RS18640at 535.212 kb on + strand, within ABZR87_RS18640at 535.212 kb on + strand, within ABZR87_RS18640at 535.212 kb on + strand, within ABZR87_RS18640at 535.213 kb on - strand, within ABZR87_RS18640at 535.213 kb on - strand, within ABZR87_RS18640at 535.213 kb on - strand, within ABZR87_RS18640at 535.213 kb on - strand, within ABZR87_RS18640at 535.213 kb on - strand, within ABZR87_RS18640at 535.359 kb on + strand, within ABZR87_RS18640at 535.443 kb on + strand, within ABZR87_RS18640at 535.444 kb on - strand, within ABZR87_RS18640at 535.499 kb on - strand, within ABZR87_RS18640at 535.499 kb on - strand, within ABZR87_RS18640at 535.563 kb on + strand, within ABZR87_RS18640at 535.563 kb on + strand, within ABZR87_RS18640at 535.564 kb on - strand, within ABZR87_RS18640at 535.712 kb on + strand, within ABZR87_RS18640at 535.712 kb on + strand, within ABZR87_RS18640at 535.713 kb on - strand, within ABZR87_RS18640at 535.758 kb on + strand, within ABZR87_RS18640at 535.759 kb on - strand, within ABZR87_RS18640at 535.759 kb on - strand, within ABZR87_RS18640at 535.759 kb on - strand, within ABZR87_RS18640at 536.040 kb on + strand, within ABZR87_RS18640at 536.130 kb on + strand, within ABZR87_RS18640at 536.130 kb on + strand, within ABZR87_RS18640at 536.131 kb on - strand, within ABZR87_RS18640at 536.227 kb on - strand, within ABZR87_RS18640at 536.305 kb on - strand, within ABZR87_RS18640at 536.359 kb on - strand, within ABZR87_RS18640at 536.463 kb on + strand, within ABZR87_RS18640at 536.670 kb on + strand, within ABZR87_RS18640at 536.671 kb on - strand, within ABZR87_RS18640at 536.671 kb on - strand, within ABZR87_RS18640at 536.920 kb on + strandat 536.921 kb on - strandat 537.043 kb on - strandat 537.049 kb on - strandat 537.056 kb on + strandat 537.260 kb on + strand, within ABZR87_RS18645at 537.543 kb on + strandat 537.543 kb on + strandat 537.543 kb on + strandat 537.544 kb on - strandat 537.570 kb on + strandat 537.570 kb on + strandat 537.575 kb on - strandat 537.716 kb on + strand, within ABZR87_RS18650at 537.717 kb on - strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.739 kb on + strand, within ABZR87_RS18650at 537.739 kb on + strand, within ABZR87_RS18650at 537.739 kb on + strand, within ABZR87_RS18650at 537.740 kb on - strand, within ABZR87_RS18650at 537.740 kb on - strand, within ABZR87_RS18650at 537.816 kb on + strand, within ABZR87_RS18650at 537.817 kb on - strand, within ABZR87_RS18650at 537.817 kb on - strand, within ABZR87_RS18650at 537.859 kb on + strand, within ABZR87_RS18650at 537.859 kb on + strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.909 kb on - strandat 537.909 kb on - strandat 537.949 kb on + strandat 537.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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534,310 - ABZR87_RS18635 0.63 +0.1
534,310 - ABZR87_RS18635 0.63 +0.2
534,400 - ABZR87_RS18635 0.69 -1.2
534,403 + ABZR87_RS18635 0.69 +0.8
534,403 + ABZR87_RS18635 0.69 +0.6
534,554 + ABZR87_RS18635 0.80 -1.4
534,554 + ABZR87_RS18635 0.80 -0.4
534,555 - ABZR87_RS18635 0.80 -0.5
535,029 + +0.8
535,030 - +0.4
535,030 - -0.7
535,030 - -0.2
535,030 - -1.2
535,030 - -0.7
535,068 + +1.5
535,069 - -0.3
535,069 - +0.8
535,126 - ABZR87_RS18640 0.12 +0.6
535,126 - ABZR87_RS18640 0.12 +0.1
535,212 + ABZR87_RS18640 0.16 -0.7
535,212 + ABZR87_RS18640 0.16 -0.9
535,212 + ABZR87_RS18640 0.16 +0.3
535,212 + ABZR87_RS18640 0.16 +2.2
535,212 + ABZR87_RS18640 0.16 -0.2
535,213 - ABZR87_RS18640 0.16 +0.1
535,213 - ABZR87_RS18640 0.16 -1.3
535,213 - ABZR87_RS18640 0.16 -0.2
535,213 - ABZR87_RS18640 0.16 -1.2
535,213 - ABZR87_RS18640 0.16 -0.0
535,359 + ABZR87_RS18640 0.23 -0.8
535,443 + ABZR87_RS18640 0.27 +0.2
535,444 - ABZR87_RS18640 0.27 +0.0
535,499 - ABZR87_RS18640 0.29 +0.1
535,499 - ABZR87_RS18640 0.29 -2.2
535,563 + ABZR87_RS18640 0.32 -0.7
535,563 + ABZR87_RS18640 0.32 -2.4
535,564 - ABZR87_RS18640 0.32 -0.6
535,712 + ABZR87_RS18640 0.39 -0.8
535,712 + ABZR87_RS18640 0.39 -0.3
535,713 - ABZR87_RS18640 0.39 +1.3
535,758 + ABZR87_RS18640 0.41 -0.4
535,759 - ABZR87_RS18640 0.41 -0.4
535,759 - ABZR87_RS18640 0.41 +0.2
535,759 - ABZR87_RS18640 0.41 +0.5
536,040 + ABZR87_RS18640 0.54 -1.0
536,130 + ABZR87_RS18640 0.58 +0.6
536,130 + ABZR87_RS18640 0.58 -0.1
536,131 - ABZR87_RS18640 0.59 +0.7
536,227 - ABZR87_RS18640 0.63 +0.6
536,305 - ABZR87_RS18640 0.67 -1.8
536,359 - ABZR87_RS18640 0.69 -0.7
536,463 + ABZR87_RS18640 0.74 +0.6
536,670 + ABZR87_RS18640 0.84 +0.1
536,671 - ABZR87_RS18640 0.84 -0.0
536,671 - ABZR87_RS18640 0.84 -0.4
536,920 + +0.5
536,921 - +0.1
537,043 - -0.6
537,049 - -1.3
537,056 + +2.1
537,260 + ABZR87_RS18645 0.42 +0.4
537,543 + -0.3
537,543 + -0.8
537,543 + +0.6
537,544 - -0.2
537,570 + +0.8
537,570 + +0.3
537,575 - -1.1
537,716 + ABZR87_RS18650 0.38 -1.4
537,717 - ABZR87_RS18650 0.38 -0.3
537,718 + ABZR87_RS18650 0.38 -0.1
537,718 + ABZR87_RS18650 0.38 +1.0
537,718 + ABZR87_RS18650 0.38 +0.3
537,718 + ABZR87_RS18650 0.38 +0.6
537,718 + ABZR87_RS18650 0.38 +0.0
537,718 + ABZR87_RS18650 0.38 -1.0
537,718 + ABZR87_RS18650 0.38 +0.2
537,718 + ABZR87_RS18650 0.38 +0.1
537,718 + ABZR87_RS18650 0.38 -0.1
537,718 + ABZR87_RS18650 0.38 -1.5
537,719 - ABZR87_RS18650 0.38 +0.2
537,719 - ABZR87_RS18650 0.38 +1.3
537,719 - ABZR87_RS18650 0.38 +0.4
537,719 - ABZR87_RS18650 0.38 +0.3
537,719 - ABZR87_RS18650 0.38 -0.3
537,719 - ABZR87_RS18650 0.38 -0.3
537,719 - ABZR87_RS18650 0.38 -0.5
537,719 - ABZR87_RS18650 0.38 +0.8
537,719 - ABZR87_RS18650 0.38 -0.4
537,719 - ABZR87_RS18650 0.38 -1.0
537,719 - ABZR87_RS18650 0.38 +0.9
537,719 - ABZR87_RS18650 0.38 -0.5
537,739 + ABZR87_RS18650 0.44 +1.5
537,739 + ABZR87_RS18650 0.44 -1.3
537,739 + ABZR87_RS18650 0.44 -0.1
537,740 - ABZR87_RS18650 0.45 +0.7
537,740 - ABZR87_RS18650 0.45 -1.1
537,816 + ABZR87_RS18650 0.68 +0.1
537,817 - ABZR87_RS18650 0.68 +0.1
537,817 - ABZR87_RS18650 0.68 -0.4
537,859 + ABZR87_RS18650 0.80 -0.2
537,859 + ABZR87_RS18650 0.80 -0.9
537,860 - ABZR87_RS18650 0.81 -0.0
537,860 - ABZR87_RS18650 0.81 +0.2
537,860 - ABZR87_RS18650 0.81 -0.4
537,860 - ABZR87_RS18650 0.81 -1.1
537,909 - +0.0
537,909 - -0.1
537,949 + -1.7
537,949 + -1.0

Or see this region's nucleotide sequence