Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17720 and ABZR87_RS17725 overlap by 11 nucleotides ABZR87_RS17725 and ABZR87_RS17730 are separated by 51 nucleotides
ABZR87_RS17720: ABZR87_RS17720 - ABC transporter permease, at 338,346 to 339,242
_RS17720
ABZR87_RS17725: ABZR87_RS17725 - ABC transporter ATP-binding protein, at 339,232 to 340,026
_RS17725
ABZR87_RS17730: ABZR87_RS17730 - GntR family transcriptional regulator, at 340,078 to 340,800
_RS17730
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.272 kb on - strand at 338.272 kb on - strand at 338.308 kb on + strand at 338.308 kb on + strand at 338.309 kb on - strand at 338.347 kb on + strand at 338.348 kb on - strand at 338.348 kb on - strand at 338.348 kb on - strand at 338.397 kb on + strand at 338.400 kb on + strand at 338.400 kb on + strand at 338.401 kb on - strand at 338.401 kb on - strand at 338.485 kb on + strand, within ABZR87_RS17720 at 338.485 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.491 kb on + strand, within ABZR87_RS17720 at 338.492 kb on - strand, within ABZR87_RS17720 at 338.633 kb on - strand, within ABZR87_RS17720 at 338.633 kb on - strand, within ABZR87_RS17720 at 338.633 kb on - strand, within ABZR87_RS17720 at 338.654 kb on - strand, within ABZR87_RS17720 at 338.917 kb on + strand, within ABZR87_RS17720 at 339.112 kb on + strand, within ABZR87_RS17720 at 339.182 kb on - strand at 339.182 kb on - strand at 339.182 kb on - strand at 339.457 kb on + strand, within ABZR87_RS17725 at 339.644 kb on + strand, within ABZR87_RS17725 at 339.645 kb on - strand, within ABZR87_RS17725 at 339.645 kb on - strand, within ABZR87_RS17725 at 339.867 kb on + strand, within ABZR87_RS17725 at 339.867 kb on + strand, within ABZR87_RS17725 at 339.868 kb on - strand, within ABZR87_RS17725 at 339.896 kb on + strand, within ABZR87_RS17725 at 339.897 kb on - strand, within ABZR87_RS17725 at 339.897 kb on - strand, within ABZR87_RS17725 at 339.897 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 339.933 kb on - strand, within ABZR87_RS17725 at 340.070 kb on - strand at 340.154 kb on + strand, within ABZR87_RS17730 at 340.220 kb on + strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.302 kb on - strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.773 kb on - strand at 340.822 kb on - strand at 340.822 kb on - strand at 340.829 kb on + strand at 340.831 kb on + strand at 340.832 kb on - strand at 340.847 kb on - strand at 340.847 kb on - strand at 340.847 kb on - strand at 340.872 kb on - strand at 340.872 kb on - strand at 340.924 kb on - strand at 340.970 kb on + strand at 340.970 kb on + strand at 340.971 kb on - strand at 340.971 kb on - strand at 340.971 kb on - strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.974 kb on - strand at 340.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 338,272 - -0.3 338,272 - +0.6 338,308 + +0.5 338,308 + +0.4 338,309 - -1.0 338,347 + -0.2 338,348 - +0.8 338,348 - +1.1 338,348 - -0.0 338,397 + -0.2 338,400 + +0.6 338,400 + -0.7 338,401 - -0.9 338,401 - +0.2 338,485 + ABZR87_RS17720 0.15 -0.4 338,485 + ABZR87_RS17720 0.15 +0.2 338,491 + ABZR87_RS17720 0.16 -0.3 338,491 + ABZR87_RS17720 0.16 -1.3 338,491 + ABZR87_RS17720 0.16 +0.8 338,491 + ABZR87_RS17720 0.16 -0.3 338,492 - ABZR87_RS17720 0.16 -0.8 338,633 - ABZR87_RS17720 0.32 -0.8 338,633 - ABZR87_RS17720 0.32 +0.1 338,633 - ABZR87_RS17720 0.32 +0.3 338,654 - ABZR87_RS17720 0.34 -0.2 338,917 + ABZR87_RS17720 0.64 +0.3 339,112 + ABZR87_RS17720 0.85 +0.2 339,182 - -1.2 339,182 - -0.1 339,182 - -0.7 339,457 + ABZR87_RS17725 0.28 -1.3 339,644 + ABZR87_RS17725 0.52 +0.5 339,645 - ABZR87_RS17725 0.52 -0.9 339,645 - ABZR87_RS17725 0.52 +0.0 339,867 + ABZR87_RS17725 0.80 -0.3 339,867 + ABZR87_RS17725 0.80 -2.0 339,868 - ABZR87_RS17725 0.80 +1.1 339,896 + ABZR87_RS17725 0.84 -0.6 339,897 - ABZR87_RS17725 0.84 -1.1 339,897 - ABZR87_RS17725 0.84 +0.0 339,897 - ABZR87_RS17725 0.84 -2.3 339,933 - ABZR87_RS17725 0.88 -0.2 339,933 - ABZR87_RS17725 0.88 -0.7 339,933 - ABZR87_RS17725 0.88 -0.0 339,933 - ABZR87_RS17725 0.88 -0.1 339,933 - ABZR87_RS17725 0.88 -1.7 340,070 - +0.1 340,154 + ABZR87_RS17730 0.11 -0.3 340,220 + ABZR87_RS17730 0.20 +0.6 340,221 - ABZR87_RS17730 0.20 +0.0 340,221 - ABZR87_RS17730 0.20 +0.3 340,221 - ABZR87_RS17730 0.20 +0.0 340,293 - ABZR87_RS17730 0.30 +0.2 340,293 - ABZR87_RS17730 0.30 -0.2 340,293 - ABZR87_RS17730 0.30 +0.2 340,302 - ABZR87_RS17730 0.31 -1.0 340,676 + ABZR87_RS17730 0.83 -1.8 340,676 + ABZR87_RS17730 0.83 -0.3 340,676 + ABZR87_RS17730 0.83 -0.2 340,773 - +0.0 340,822 - -1.0 340,822 - -0.3 340,829 + +0.5 340,831 + +1.9 340,832 - -0.5 340,847 - +1.4 340,847 - +0.5 340,847 - +0.4 340,872 - +0.5 340,872 - +1.4 340,924 - -0.7 340,970 + +0.6 340,970 + +0.1 340,971 - +0.5 340,971 - +0.1 340,971 - -1.7 340,973 + +0.1 340,973 + +0.7 340,973 + +0.1 340,973 + +0.2 340,974 - -1.4 340,974 - +0.5
Or see this region's nucleotide sequence