Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17620 and ABZR87_RS17625 are separated by 112 nucleotides ABZR87_RS17625 and ABZR87_RS17630 are separated by 55 nucleotides
ABZR87_RS17620: ABZR87_RS17620 - LysR family transcriptional regulator, at 318,459 to 319,397
_RS17620
ABZR87_RS17625: ABZR87_RS17625 - SDR family oxidoreductase, at 319,510 to 320,271
_RS17625
ABZR87_RS17630: ABZR87_RS17630 - alpha/beta hydrolase, at 320,327 to 321,283
_RS17630
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1 at 318.513 kb on + strand at 318.513 kb on + strand at 318.514 kb on - strand at 318.514 kb on - strand at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 319.435 kb on - strand at 319.969 kb on + strand, within ABZR87_RS17625 at 319.969 kb on + strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.269 kb on + strand at 320.285 kb on - strand at 320.285 kb on - strand at 320.504 kb on + strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.505 kb on - strand, within ABZR87_RS17630 at 320.562 kb on + strand, within ABZR87_RS17630 at 320.562 kb on + strand, within ABZR87_RS17630 at 320.563 kb on - strand, within ABZR87_RS17630 at 320.721 kb on - strand, within ABZR87_RS17630 at 320.721 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.727 kb on - strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.843 kb on + strand, within ABZR87_RS17630 at 320.844 kb on - strand, within ABZR87_RS17630 at 320.844 kb on - strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.888 kb on + strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.889 kb on - strand, within ABZR87_RS17630 at 320.960 kb on + strand, within ABZR87_RS17630 at 320.960 kb on + strand, within ABZR87_RS17630 at 320.961 kb on - strand, within ABZR87_RS17630 at 320.972 kb on + strand, within ABZR87_RS17630 at 321.008 kb on + strand, within ABZR87_RS17630 at 321.009 kb on - strand, within ABZR87_RS17630 at 321.084 kb on + strand, within ABZR87_RS17630 at 321.084 kb on + strand, within ABZR87_RS17630 at 321.085 kb on - strand, within ABZR87_RS17630
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 318,513 + -0.7 318,513 + +0.3 318,514 - -0.1 318,514 - -0.0 318,592 + ABZR87_RS17620 0.14 -1.1 318,592 + ABZR87_RS17620 0.14 +0.7 318,592 + ABZR87_RS17620 0.14 +0.6 318,592 + ABZR87_RS17620 0.14 -1.7 318,593 - ABZR87_RS17620 0.14 -0.9 318,593 - ABZR87_RS17620 0.14 -0.2 318,593 - ABZR87_RS17620 0.14 -2.7 319,435 - +0.3 319,969 + ABZR87_RS17625 0.60 -0.0 319,969 + ABZR87_RS17625 0.60 +0.4 320,084 - ABZR87_RS17625 0.75 -0.2 320,084 - ABZR87_RS17625 0.75 +0.8 320,269 + -0.5 320,285 - -0.0 320,285 - -0.7 320,504 + ABZR87_RS17630 0.18 -1.1 320,505 - ABZR87_RS17630 0.19 -0.2 320,505 - ABZR87_RS17630 0.19 -1.3 320,505 - ABZR87_RS17630 0.19 -0.0 320,505 - ABZR87_RS17630 0.19 -0.2 320,562 + ABZR87_RS17630 0.25 +0.4 320,562 + ABZR87_RS17630 0.25 -0.6 320,563 - ABZR87_RS17630 0.25 +0.3 320,721 - ABZR87_RS17630 0.41 -1.7 320,721 - ABZR87_RS17630 0.41 -0.0 320,727 - ABZR87_RS17630 0.42 +1.0 320,727 - ABZR87_RS17630 0.42 -0.5 320,727 - ABZR87_RS17630 0.42 -0.7 320,843 + ABZR87_RS17630 0.54 -0.6 320,843 + ABZR87_RS17630 0.54 +0.5 320,843 + ABZR87_RS17630 0.54 -0.2 320,843 + ABZR87_RS17630 0.54 +1.2 320,844 - ABZR87_RS17630 0.54 +0.2 320,844 - ABZR87_RS17630 0.54 +0.4 320,888 + ABZR87_RS17630 0.59 -0.2 320,888 + ABZR87_RS17630 0.59 +0.7 320,888 + ABZR87_RS17630 0.59 -0.8 320,889 - ABZR87_RS17630 0.59 +0.4 320,889 - ABZR87_RS17630 0.59 +0.1 320,889 - ABZR87_RS17630 0.59 -0.7 320,960 + ABZR87_RS17630 0.66 +0.2 320,960 + ABZR87_RS17630 0.66 -1.6 320,961 - ABZR87_RS17630 0.66 +0.8 320,972 + ABZR87_RS17630 0.67 +0.1 321,008 + ABZR87_RS17630 0.71 +0.2 321,009 - ABZR87_RS17630 0.71 -1.2 321,084 + ABZR87_RS17630 0.79 +1.4 321,084 + ABZR87_RS17630 0.79 -1.5 321,085 - ABZR87_RS17630 0.79 -0.2
Or see this region's nucleotide sequence