Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17610 and ABZR87_RS17615 are separated by 79 nucleotides ABZR87_RS17615 and ABZR87_RS17620 are separated by 208 nucleotides
ABZR87_RS17610: ABZR87_RS17610 - SulP family inorganic anion transporter, at 315,850 to 317,619
_RS17610
ABZR87_RS17615: ABZR87_RS17615 - hypothetical protein, at 317,699 to 318,250
_RS17615
ABZR87_RS17620: ABZR87_RS17620 - LysR family transcriptional regulator, at 318,459 to 319,397
_RS17620
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1 at 316.784 kb on + strand, within ABZR87_RS17610 at 316.785 kb on - strand, within ABZR87_RS17610 at 316.796 kb on + strand, within ABZR87_RS17610 at 316.937 kb on + strand, within ABZR87_RS17610 at 317.046 kb on - strand, within ABZR87_RS17610 at 317.405 kb on - strand, within ABZR87_RS17610 at 317.405 kb on - strand, within ABZR87_RS17610 at 317.462 kb on + strand at 317.463 kb on - strand at 317.604 kb on - strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.767 kb on - strand, within ABZR87_RS17615 at 317.767 kb on - strand, within ABZR87_RS17615 at 317.767 kb on - strand, within ABZR87_RS17615 at 317.790 kb on + strand, within ABZR87_RS17615 at 317.790 kb on + strand, within ABZR87_RS17615 at 317.790 kb on + strand, within ABZR87_RS17615 at 317.793 kb on + strand, within ABZR87_RS17615 at 317.794 kb on - strand, within ABZR87_RS17615 at 317.794 kb on - strand, within ABZR87_RS17615 at 317.814 kb on + strand, within ABZR87_RS17615 at 317.814 kb on + strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 318.111 kb on + strand, within ABZR87_RS17615 at 318.111 kb on + strand, within ABZR87_RS17615 at 318.111 kb on + strand, within ABZR87_RS17615 at 318.112 kb on - strand, within ABZR87_RS17615 at 318.278 kb on + strand at 318.278 kb on + strand at 318.278 kb on + strand at 318.278 kb on + strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.389 kb on + strand at 318.389 kb on + strand at 318.390 kb on - strand at 318.390 kb on - strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.431 kb on - strand at 318.431 kb on - strand at 318.431 kb on - strand at 318.513 kb on + strand at 318.513 kb on + strand at 318.514 kb on - strand at 318.514 kb on - strand at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 316,784 + ABZR87_RS17610 0.53 +0.1 316,785 - ABZR87_RS17610 0.53 -2.0 316,796 + ABZR87_RS17610 0.53 +1.2 316,937 + ABZR87_RS17610 0.61 +0.9 317,046 - ABZR87_RS17610 0.68 -0.1 317,405 - ABZR87_RS17610 0.88 -0.9 317,405 - ABZR87_RS17610 0.88 +1.4 317,462 + +1.4 317,463 - -0.5 317,604 - +0.1 317,700 + -0.1 317,700 + -0.7 317,700 + +0.5 317,701 - -0.3 317,701 - -1.1 317,701 - +0.6 317,701 - +0.1 317,701 - +1.1 317,766 + ABZR87_RS17615 0.12 -0.3 317,766 + ABZR87_RS17615 0.12 +0.3 317,766 + ABZR87_RS17615 0.12 -0.7 317,766 + ABZR87_RS17615 0.12 -0.1 317,766 + ABZR87_RS17615 0.12 -0.7 317,766 + ABZR87_RS17615 0.12 +1.2 317,767 - ABZR87_RS17615 0.12 -0.0 317,767 - ABZR87_RS17615 0.12 +0.4 317,767 - ABZR87_RS17615 0.12 +0.8 317,790 + ABZR87_RS17615 0.16 +1.3 317,790 + ABZR87_RS17615 0.16 +0.0 317,790 + ABZR87_RS17615 0.16 +1.0 317,793 + ABZR87_RS17615 0.17 +0.3 317,794 - ABZR87_RS17615 0.17 +0.6 317,794 - ABZR87_RS17615 0.17 -0.5 317,814 + ABZR87_RS17615 0.21 -0.5 317,814 + ABZR87_RS17615 0.21 +0.4 317,815 - ABZR87_RS17615 0.21 +0.8 317,815 - ABZR87_RS17615 0.21 +0.1 317,815 - ABZR87_RS17615 0.21 +0.1 317,815 - ABZR87_RS17615 0.21 +0.4 318,111 + ABZR87_RS17615 0.75 -0.2 318,111 + ABZR87_RS17615 0.75 +1.3 318,111 + ABZR87_RS17615 0.75 -0.5 318,112 - ABZR87_RS17615 0.75 -1.3 318,278 + -0.4 318,278 + +0.2 318,278 + -0.5 318,278 + +1.6 318,279 - +0.1 318,279 - +0.6 318,279 - -0.1 318,279 - -0.1 318,279 - -0.3 318,389 + -0.3 318,389 + +0.2 318,390 - -0.9 318,390 - +1.4 318,430 + -0.1 318,430 + -1.0 318,430 + -0.1 318,430 + +0.3 318,430 + -0.2 318,431 - -0.7 318,431 - +0.2 318,431 - +0.2 318,513 + -0.7 318,513 + +0.3 318,514 - -0.1 318,514 - -0.0 318,592 + ABZR87_RS17620 0.14 -1.1 318,592 + ABZR87_RS17620 0.14 +0.7 318,592 + ABZR87_RS17620 0.14 +0.6 318,592 + ABZR87_RS17620 0.14 -1.7 318,593 - ABZR87_RS17620 0.14 -0.9 318,593 - ABZR87_RS17620 0.14 -0.2 318,593 - ABZR87_RS17620 0.14 -2.7
Or see this region's nucleotide sequence