Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16245

Experiment: C.elegans, mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16235 and ABZR87_RS16240 are separated by 82 nucleotidesABZR87_RS16240 and ABZR87_RS16245 are separated by 11 nucleotidesABZR87_RS16245 and ABZR87_RS16250 are separated by 4 nucleotides ABZR87_RS16235: ABZR87_RS16235 - 4Fe-4S binding protein, at 3,434,691 to 3,436,850 _RS16235 ABZR87_RS16240: ABZR87_RS16240 - DUF3306 domain-containing protein, at 3,436,933 to 3,437,502 _RS16240 ABZR87_RS16245: ABZR87_RS16245 - DUF3305 domain-containing protein, at 3,437,514 to 3,438,041 _RS16245 ABZR87_RS16250: ABZR87_RS16250 - iron-sulfur cluster carrier protein ApbC, at 3,438,046 to 3,439,134 _RS16250 Position (kb) 3437 3438 3439Strain fitness (log2 ratio) -2 -1 0 1 2at 3436.863 kb on - strandat 3436.939 kb on + strandat 3436.940 kb on - strandat 3437.113 kb on + strand, within ABZR87_RS16240at 3437.113 kb on + strand, within ABZR87_RS16240at 3437.124 kb on + strand, within ABZR87_RS16240at 3437.174 kb on + strand, within ABZR87_RS16240at 3437.175 kb on - strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.186 kb on + strand, within ABZR87_RS16240at 3437.187 kb on - strand, within ABZR87_RS16240at 3437.187 kb on - strand, within ABZR87_RS16240at 3437.187 kb on - strand, within ABZR87_RS16240at 3437.187 kb on - strand, within ABZR87_RS16240at 3437.187 kb on - strand, within ABZR87_RS16240at 3437.190 kb on + strand, within ABZR87_RS16240at 3437.190 kb on + strand, within ABZR87_RS16240at 3437.190 kb on + strand, within ABZR87_RS16240at 3437.190 kb on + strand, within ABZR87_RS16240at 3437.191 kb on - strand, within ABZR87_RS16240at 3437.191 kb on - strand, within ABZR87_RS16240at 3437.584 kb on + strand, within ABZR87_RS16245at 3437.585 kb on - strand, within ABZR87_RS16245at 3437.599 kb on + strand, within ABZR87_RS16245at 3437.599 kb on + strand, within ABZR87_RS16245at 3437.599 kb on + strand, within ABZR87_RS16245at 3437.599 kb on + strand, within ABZR87_RS16245at 3437.599 kb on + strand, within ABZR87_RS16245at 3437.600 kb on - strand, within ABZR87_RS16245at 3437.600 kb on - strand, within ABZR87_RS16245at 3437.686 kb on + strand, within ABZR87_RS16245at 3437.686 kb on + strand, within ABZR87_RS16245at 3437.686 kb on + strand, within ABZR87_RS16245at 3437.687 kb on - strand, within ABZR87_RS16245at 3437.687 kb on - strand, within ABZR87_RS16245at 3437.687 kb on - strand, within ABZR87_RS16245at 3437.687 kb on - strand, within ABZR87_RS16245at 3437.687 kb on - strand, within ABZR87_RS16245at 3437.703 kb on - strand, within ABZR87_RS16245at 3437.794 kb on + strand, within ABZR87_RS16245at 3437.794 kb on + strand, within ABZR87_RS16245at 3437.794 kb on + strand, within ABZR87_RS16245at 3437.795 kb on - strand, within ABZR87_RS16245at 3437.795 kb on - strand, within ABZR87_RS16245at 3437.795 kb on - strand, within ABZR87_RS16245at 3437.797 kb on + strand, within ABZR87_RS16245at 3437.798 kb on - strand, within ABZR87_RS16245at 3437.798 kb on - strand, within ABZR87_RS16245at 3437.906 kb on - strand, within ABZR87_RS16245at 3437.947 kb on + strand, within ABZR87_RS16245at 3438.141 kb on - strandat 3438.141 kb on - strandat 3438.252 kb on - strand, within ABZR87_RS16250at 3438.324 kb on - strand, within ABZR87_RS16250at 3438.512 kb on + strand, within ABZR87_RS16250at 3438.512 kb on + strand, within ABZR87_RS16250at 3438.512 kb on + strand, within ABZR87_RS16250at 3438.512 kb on + strand, within ABZR87_RS16250at 3438.512 kb on + strand, within ABZR87_RS16250at 3438.721 kb on + strand, within ABZR87_RS16250at 3438.722 kb on + strand, within ABZR87_RS16250at 3438.722 kb on + strand, within ABZR87_RS16250at 3438.722 kb on + strand, within ABZR87_RS16250at 3438.723 kb on - strand, within ABZR87_RS16250at 3438.723 kb on - strand, within ABZR87_RS16250at 3438.723 kb on - strand, within ABZR87_RS16250at 3438.723 kb on - strand, within ABZR87_RS16250at 3438.723 kb on - strand, within ABZR87_RS16250at 3438.723 kb on - strand, within ABZR87_RS16250at 3439.016 kb on - strand, within ABZR87_RS16250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
remove
3,436,863 - +0.3
3,436,939 + +0.4
3,436,940 - -0.1
3,437,113 + ABZR87_RS16240 0.32 -0.8
3,437,113 + ABZR87_RS16240 0.32 -0.1
3,437,124 + ABZR87_RS16240 0.34 +0.1
3,437,174 + ABZR87_RS16240 0.42 -0.1
3,437,175 - ABZR87_RS16240 0.42 +0.2
3,437,186 + ABZR87_RS16240 0.44 -0.5
3,437,186 + ABZR87_RS16240 0.44 -1.4
3,437,186 + ABZR87_RS16240 0.44 +0.5
3,437,186 + ABZR87_RS16240 0.44 -0.0
3,437,186 + ABZR87_RS16240 0.44 +0.2
3,437,186 + ABZR87_RS16240 0.44 -0.5
3,437,186 + ABZR87_RS16240 0.44 -0.9
3,437,186 + ABZR87_RS16240 0.44 -0.2
3,437,186 + ABZR87_RS16240 0.44 +0.7
3,437,186 + ABZR87_RS16240 0.44 +1.9
3,437,187 - ABZR87_RS16240 0.45 +0.0
3,437,187 - ABZR87_RS16240 0.45 +0.9
3,437,187 - ABZR87_RS16240 0.45 -0.2
3,437,187 - ABZR87_RS16240 0.45 +0.7
3,437,187 - ABZR87_RS16240 0.45 +0.2
3,437,190 + ABZR87_RS16240 0.45 +0.5
3,437,190 + ABZR87_RS16240 0.45 +1.7
3,437,190 + ABZR87_RS16240 0.45 -0.5
3,437,190 + ABZR87_RS16240 0.45 +0.3
3,437,191 - ABZR87_RS16240 0.45 -0.6
3,437,191 - ABZR87_RS16240 0.45 -0.2
3,437,584 + ABZR87_RS16245 0.13 -0.5
3,437,585 - ABZR87_RS16245 0.13 +0.2
3,437,599 + ABZR87_RS16245 0.16 +0.8
3,437,599 + ABZR87_RS16245 0.16 -0.5
3,437,599 + ABZR87_RS16245 0.16 +0.0
3,437,599 + ABZR87_RS16245 0.16 +0.6
3,437,599 + ABZR87_RS16245 0.16 -0.3
3,437,600 - ABZR87_RS16245 0.16 +1.2
3,437,600 - ABZR87_RS16245 0.16 -0.6
3,437,686 + ABZR87_RS16245 0.33 -0.4
3,437,686 + ABZR87_RS16245 0.33 -0.2
3,437,686 + ABZR87_RS16245 0.33 +1.3
3,437,687 - ABZR87_RS16245 0.33 -0.2
3,437,687 - ABZR87_RS16245 0.33 -1.2
3,437,687 - ABZR87_RS16245 0.33 +0.6
3,437,687 - ABZR87_RS16245 0.33 -0.3
3,437,687 - ABZR87_RS16245 0.33 -1.0
3,437,703 - ABZR87_RS16245 0.36 -0.4
3,437,794 + ABZR87_RS16245 0.53 +0.6
3,437,794 + ABZR87_RS16245 0.53 +0.0
3,437,794 + ABZR87_RS16245 0.53 +0.5
3,437,795 - ABZR87_RS16245 0.53 +0.2
3,437,795 - ABZR87_RS16245 0.53 -0.2
3,437,795 - ABZR87_RS16245 0.53 +0.8
3,437,797 + ABZR87_RS16245 0.54 -0.1
3,437,798 - ABZR87_RS16245 0.54 -0.1
3,437,798 - ABZR87_RS16245 0.54 -1.3
3,437,906 - ABZR87_RS16245 0.74 +0.1
3,437,947 + ABZR87_RS16245 0.82 +0.1
3,438,141 - -1.5
3,438,141 - +0.5
3,438,252 - ABZR87_RS16250 0.19 -0.4
3,438,324 - ABZR87_RS16250 0.26 +2.0
3,438,512 + ABZR87_RS16250 0.43 +0.0
3,438,512 + ABZR87_RS16250 0.43 -0.4
3,438,512 + ABZR87_RS16250 0.43 -1.1
3,438,512 + ABZR87_RS16250 0.43 +1.5
3,438,512 + ABZR87_RS16250 0.43 -0.1
3,438,721 + ABZR87_RS16250 0.62 +0.0
3,438,722 + ABZR87_RS16250 0.62 +1.3
3,438,722 + ABZR87_RS16250 0.62 -0.7
3,438,722 + ABZR87_RS16250 0.62 -1.8
3,438,723 - ABZR87_RS16250 0.62 -0.7
3,438,723 - ABZR87_RS16250 0.62 +0.0
3,438,723 - ABZR87_RS16250 0.62 -0.3
3,438,723 - ABZR87_RS16250 0.62 +0.9
3,438,723 - ABZR87_RS16250 0.62 -0.5
3,438,723 - ABZR87_RS16250 0.62 +2.0
3,439,016 - ABZR87_RS16250 0.89 -2.1

Or see this region's nucleotide sequence