Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08525 and ABZR87_RS08530 are separated by 131 nucleotides ABZR87_RS08530 and ABZR87_RS08535 are separated by 515 nucleotides
ABZR87_RS08525: ABZR87_RS08525 - prepilin peptidase, at 1,811,083 to 1,811,616
_RS08525
ABZR87_RS08530: ABZR87_RS08530 - Flp family type IVb pilin, at 1,811,748 to 1,811,924
_RS08530
ABZR87_RS08535: ABZR87_RS08535 - Flp family type IVb pilin, at 1,812,440 to 1,812,655
_RS08535
Position (kb)
1811
1812 Strain fitness (log2 ratio)
-1
0
1 at 1810.776 kb on + strand at 1810.776 kb on + strand at 1811.107 kb on + strand at 1811.107 kb on + strand at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.400 kb on - strand, within ABZR87_RS08525 at 1811.400 kb on - strand, within ABZR87_RS08525 at 1811.825 kb on - strand, within ABZR87_RS08530 at 1811.825 kb on - strand, within ABZR87_RS08530 at 1811.867 kb on - strand, within ABZR87_RS08530 at 1811.867 kb on - strand, within ABZR87_RS08530 at 1812.346 kb on - strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.439 kb on - strand at 1812.439 kb on - strand at 1812.714 kb on + strand at 1812.714 kb on + strand at 1812.714 kb on + strand at 1812.714 kb on + strand at 1812.714 kb on + strand at 1812.714 kb on + strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.715 kb on - strand at 1812.825 kb on + strand at 1812.825 kb on + strand at 1812.825 kb on + strand at 1812.826 kb on - strand at 1812.826 kb on - strand at 1812.862 kb on + strand at 1812.862 kb on + strand at 1812.878 kb on + strand at 1812.878 kb on + strand at 1812.878 kb on + strand at 1812.878 kb on + strand at 1812.879 kb on - strand at 1812.879 kb on - strand at 1812.879 kb on - strand at 1812.879 kb on - strand at 1812.879 kb on - strand at 1812.898 kb on + strand at 1812.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,810,776 + -0.8 1,810,776 + +0.3 1,811,107 + +0.1 1,811,107 + -0.2 1,811,399 + ABZR87_RS08525 0.59 -0.1 1,811,399 + ABZR87_RS08525 0.59 -0.5 1,811,399 + ABZR87_RS08525 0.59 +0.5 1,811,400 - ABZR87_RS08525 0.59 +1.2 1,811,400 - ABZR87_RS08525 0.59 -0.5 1,811,825 - ABZR87_RS08530 0.44 -1.3 1,811,825 - ABZR87_RS08530 0.44 -1.2 1,811,867 - ABZR87_RS08530 0.67 -0.6 1,811,867 - ABZR87_RS08530 0.67 -0.2 1,812,346 - -1.5 1,812,438 + +1.0 1,812,438 + -0.3 1,812,438 + -0.4 1,812,438 + -1.2 1,812,438 + -1.6 1,812,438 + -1.0 1,812,438 + -1.5 1,812,439 - -1.2 1,812,439 - -0.5 1,812,714 + -0.3 1,812,714 + -0.3 1,812,714 + +0.1 1,812,714 + +0.1 1,812,714 + +1.2 1,812,714 + -0.4 1,812,715 - +0.5 1,812,715 - -0.1 1,812,715 - -0.1 1,812,715 - +0.8 1,812,715 - +0.4 1,812,715 - -0.1 1,812,715 - +0.4 1,812,715 - +0.2 1,812,715 - -0.4 1,812,715 - -0.4 1,812,715 - +0.9 1,812,715 - -0.1 1,812,825 + -0.8 1,812,825 + +0.7 1,812,825 + -0.2 1,812,826 - -0.4 1,812,826 - -0.9 1,812,862 + +0.3 1,812,862 + +0.3 1,812,878 + +0.1 1,812,878 + +0.3 1,812,878 + -0.1 1,812,878 + +0.1 1,812,879 - +0.1 1,812,879 - -0.0 1,812,879 - -1.3 1,812,879 - -1.1 1,812,879 - -0.3 1,812,898 + -0.1 1,812,898 + -0.3
Or see this region's nucleotide sequence