Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08520 and ABZR87_RS08525 are separated by 363 nucleotides ABZR87_RS08525 and ABZR87_RS08530 are separated by 131 nucleotides ABZR87_RS08530 and ABZR87_RS08535 are separated by 515 nucleotides
ABZR87_RS08520: ABZR87_RS08520 - Flp pilus assembly protein CpaB, at 1,809,862 to 1,810,719
_RS08520
ABZR87_RS08525: ABZR87_RS08525 - prepilin peptidase, at 1,811,083 to 1,811,616
_RS08525
ABZR87_RS08530: ABZR87_RS08530 - Flp family type IVb pilin, at 1,811,748 to 1,811,924
_RS08530
ABZR87_RS08535: ABZR87_RS08535 - Flp family type IVb pilin, at 1,812,440 to 1,812,655
_RS08535
Position (kb)
1811
1812 Strain fitness (log2 ratio)
-1
0
1 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.776 kb on + strand at 1810.776 kb on + strand at 1811.107 kb on + strand at 1811.107 kb on + strand at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.400 kb on - strand, within ABZR87_RS08525 at 1811.400 kb on - strand, within ABZR87_RS08525 at 1811.825 kb on - strand, within ABZR87_RS08530 at 1811.825 kb on - strand, within ABZR87_RS08530 at 1811.867 kb on - strand, within ABZR87_RS08530 at 1811.867 kb on - strand, within ABZR87_RS08530 at 1812.346 kb on - strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.438 kb on + strand at 1812.439 kb on - strand at 1812.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,810,310 + ABZR87_RS08520 0.52 +0.8 1,810,310 + ABZR87_RS08520 0.52 +0.5 1,810,310 + ABZR87_RS08520 0.52 -1.4 1,810,310 + ABZR87_RS08520 0.52 +0.7 1,810,311 - ABZR87_RS08520 0.52 +0.3 1,810,311 - ABZR87_RS08520 0.52 +0.1 1,810,311 - ABZR87_RS08520 0.52 -0.8 1,810,311 - ABZR87_RS08520 0.52 +0.8 1,810,776 + -0.8 1,810,776 + +0.3 1,811,107 + +0.1 1,811,107 + -0.2 1,811,399 + ABZR87_RS08525 0.59 -0.1 1,811,399 + ABZR87_RS08525 0.59 -0.5 1,811,399 + ABZR87_RS08525 0.59 +0.5 1,811,400 - ABZR87_RS08525 0.59 +1.2 1,811,400 - ABZR87_RS08525 0.59 -0.5 1,811,825 - ABZR87_RS08530 0.44 -1.3 1,811,825 - ABZR87_RS08530 0.44 -1.2 1,811,867 - ABZR87_RS08530 0.67 -0.6 1,811,867 - ABZR87_RS08530 0.67 -0.2 1,812,346 - -1.5 1,812,438 + +1.0 1,812,438 + -0.3 1,812,438 + -0.4 1,812,438 + -1.2 1,812,438 + -1.6 1,812,438 + -1.0 1,812,438 + -1.5 1,812,439 - -1.2 1,812,439 - -0.5
Or see this region's nucleotide sequence