Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08515 and ABZR87_RS08520 are separated by 149 nucleotides ABZR87_RS08520 and ABZR87_RS08525 are separated by 363 nucleotides
ABZR87_RS08515: ABZR87_RS08515 - type II and III secretion system protein family protein, at 1,807,820 to 1,809,712
_RS08515
ABZR87_RS08520: ABZR87_RS08520 - Flp pilus assembly protein CpaB, at 1,809,862 to 1,810,719
_RS08520
ABZR87_RS08525: ABZR87_RS08525 - prepilin peptidase, at 1,811,083 to 1,811,616
_RS08525
Position (kb)
1809
1810
1811 Strain fitness (log2 ratio)
-1
0
1 at 1809.163 kb on - strand, within ABZR87_RS08515 at 1809.303 kb on + strand, within ABZR87_RS08515 at 1809.304 kb on - strand, within ABZR87_RS08515 at 1809.369 kb on - strand, within ABZR87_RS08515 at 1809.565 kb on + strand at 1809.566 kb on - strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.663 kb on + strand at 1809.664 kb on - strand at 1809.664 kb on - strand at 1809.754 kb on + strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1809.947 kb on - strand at 1809.947 kb on - strand at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.310 kb on + strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.311 kb on - strand, within ABZR87_RS08520 at 1810.776 kb on + strand at 1810.776 kb on + strand at 1811.107 kb on + strand at 1811.107 kb on + strand at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.399 kb on + strand, within ABZR87_RS08525 at 1811.400 kb on - strand, within ABZR87_RS08525 at 1811.400 kb on - strand, within ABZR87_RS08525
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,809,163 - ABZR87_RS08515 0.71 -0.1 1,809,303 + ABZR87_RS08515 0.78 -0.7 1,809,304 - ABZR87_RS08515 0.78 +0.4 1,809,369 - ABZR87_RS08515 0.82 +1.3 1,809,565 + -0.2 1,809,566 - +0.2 1,809,663 + -1.7 1,809,663 + +1.3 1,809,663 + +0.4 1,809,663 + -0.1 1,809,663 + -0.3 1,809,663 + +1.0 1,809,664 - -0.8 1,809,664 - +0.7 1,809,754 + -0.7 1,809,755 - -0.1 1,809,755 - +1.0 1,809,755 - -1.0 1,809,947 - -0.1 1,809,947 - +0.0 1,810,310 + ABZR87_RS08520 0.52 +0.8 1,810,310 + ABZR87_RS08520 0.52 +0.5 1,810,310 + ABZR87_RS08520 0.52 -1.4 1,810,310 + ABZR87_RS08520 0.52 +0.7 1,810,311 - ABZR87_RS08520 0.52 +0.3 1,810,311 - ABZR87_RS08520 0.52 +0.1 1,810,311 - ABZR87_RS08520 0.52 -0.8 1,810,311 - ABZR87_RS08520 0.52 +0.8 1,810,776 + -0.8 1,810,776 + +0.3 1,811,107 + +0.1 1,811,107 + -0.2 1,811,399 + ABZR87_RS08525 0.59 -0.1 1,811,399 + ABZR87_RS08525 0.59 -0.5 1,811,399 + ABZR87_RS08525 0.59 +0.5 1,811,400 - ABZR87_RS08525 0.59 +1.2 1,811,400 - ABZR87_RS08525 0.59 -0.5
Or see this region's nucleotide sequence