Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06965 and ABZR87_RS06970 are separated by 50 nucleotides ABZR87_RS06970 and ABZR87_RS06975 are separated by 67 nucleotides ABZR87_RS06975 and ABZR87_RS06980 are separated by 24 nucleotides ABZR87_RS06980 and ABZR87_RS06985 are separated by 170 nucleotides
ABZR87_RS06965: ABZR87_RS06965 - pantetheine-phosphate adenylyltransferase, at 1,473,579 to 1,474,082
_RS06965
ABZR87_RS06970: ABZR87_RS06970 - YfhL family 4Fe-4S dicluster ferredoxin, at 1,474,133 to 1,474,396
_RS06970
ABZR87_RS06975: ABZR87_RS06975 - DUF4124 domain-containing protein, at 1,474,464 to 1,475,102
_RS06975
ABZR87_RS06980: ABZR87_RS06980 - aminoacyl-tRNA hydrolase, at 1,475,127 to 1,475,729
_RS06980
ABZR87_RS06985: ABZR87_RS06985 - 50S ribosomal protein L25/general stress protein Ctc, at 1,475,900 to 1,476,526
_RS06985
Position (kb)
1474
1475
1476 Strain fitness (log2 ratio)
-2
-1
0
1 at 1474.081 kb on - strand at 1474.358 kb on + strand, within ABZR87_RS06970 at 1474.358 kb on + strand, within ABZR87_RS06970 at 1474.358 kb on + strand, within ABZR87_RS06970 at 1474.358 kb on + strand, within ABZR87_RS06970 at 1474.358 kb on + strand, within ABZR87_RS06970 at 1474.358 kb on + strand, within ABZR87_RS06970 at 1474.359 kb on - strand, within ABZR87_RS06970 at 1474.359 kb on - strand, within ABZR87_RS06970 at 1474.359 kb on - strand, within ABZR87_RS06970 at 1474.359 kb on - strand, within ABZR87_RS06970 at 1474.359 kb on - strand, within ABZR87_RS06970 at 1474.498 kb on + strand at 1474.498 kb on + strand at 1474.498 kb on + strand at 1474.499 kb on - strand at 1474.499 kb on - strand at 1474.499 kb on - strand at 1474.499 kb on - strand at 1474.504 kb on + strand at 1474.505 kb on - strand at 1474.528 kb on + strand, within ABZR87_RS06975 at 1474.529 kb on - strand, within ABZR87_RS06975 at 1474.529 kb on - strand, within ABZR87_RS06975 at 1474.529 kb on - strand, within ABZR87_RS06975 at 1474.679 kb on - strand, within ABZR87_RS06975 at 1474.691 kb on - strand, within ABZR87_RS06975 at 1474.708 kb on + strand, within ABZR87_RS06975 at 1474.708 kb on + strand, within ABZR87_RS06975 at 1474.708 kb on + strand, within ABZR87_RS06975 at 1474.709 kb on - strand, within ABZR87_RS06975 at 1474.709 kb on - strand, within ABZR87_RS06975 at 1474.709 kb on - strand, within ABZR87_RS06975 at 1474.724 kb on - strand, within ABZR87_RS06975 at 1474.975 kb on + strand, within ABZR87_RS06975 at 1474.975 kb on + strand, within ABZR87_RS06975 at 1474.975 kb on + strand, within ABZR87_RS06975 at 1474.976 kb on - strand, within ABZR87_RS06975 at 1474.976 kb on - strand, within ABZR87_RS06975 at 1474.976 kb on - strand, within ABZR87_RS06975 at 1475.005 kb on + strand, within ABZR87_RS06975 at 1475.117 kb on + strand at 1475.117 kb on + strand at 1475.117 kb on + strand at 1475.117 kb on + strand at 1475.118 kb on - strand at 1475.118 kb on - strand at 1475.118 kb on - strand at 1475.138 kb on + strand at 1475.138 kb on + strand at 1475.138 kb on + strand at 1475.738 kb on + strand at 1475.738 kb on + strand at 1475.773 kb on + strand at 1475.774 kb on - strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.901 kb on + strand at 1475.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,474,081 - +0.7 1,474,358 + ABZR87_RS06970 0.85 -1.6 1,474,358 + ABZR87_RS06970 0.85 +0.1 1,474,358 + ABZR87_RS06970 0.85 -0.2 1,474,358 + ABZR87_RS06970 0.85 -1.7 1,474,358 + ABZR87_RS06970 0.85 +0.7 1,474,358 + ABZR87_RS06970 0.85 +0.9 1,474,359 - ABZR87_RS06970 0.86 +0.1 1,474,359 - ABZR87_RS06970 0.86 -0.9 1,474,359 - ABZR87_RS06970 0.86 -1.8 1,474,359 - ABZR87_RS06970 0.86 +1.0 1,474,359 - ABZR87_RS06970 0.86 +0.1 1,474,498 + -2.5 1,474,498 + +0.2 1,474,498 + -0.9 1,474,499 - +0.1 1,474,499 - -0.5 1,474,499 - +0.2 1,474,499 - +1.0 1,474,504 + -0.0 1,474,505 - -0.5 1,474,528 + ABZR87_RS06975 0.10 +0.5 1,474,529 - ABZR87_RS06975 0.10 +1.1 1,474,529 - ABZR87_RS06975 0.10 +0.3 1,474,529 - ABZR87_RS06975 0.10 -0.0 1,474,679 - ABZR87_RS06975 0.34 +0.8 1,474,691 - ABZR87_RS06975 0.36 +0.2 1,474,708 + ABZR87_RS06975 0.38 +0.2 1,474,708 + ABZR87_RS06975 0.38 -0.1 1,474,708 + ABZR87_RS06975 0.38 -0.0 1,474,709 - ABZR87_RS06975 0.38 -0.1 1,474,709 - ABZR87_RS06975 0.38 +0.2 1,474,709 - ABZR87_RS06975 0.38 +0.5 1,474,724 - ABZR87_RS06975 0.41 +0.4 1,474,975 + ABZR87_RS06975 0.80 +1.0 1,474,975 + ABZR87_RS06975 0.80 +0.8 1,474,975 + ABZR87_RS06975 0.80 -1.9 1,474,976 - ABZR87_RS06975 0.80 -0.1 1,474,976 - ABZR87_RS06975 0.80 +0.6 1,474,976 - ABZR87_RS06975 0.80 +0.1 1,475,005 + ABZR87_RS06975 0.85 -0.4 1,475,117 + -1.2 1,475,117 + +0.3 1,475,117 + -0.3 1,475,117 + +0.4 1,475,118 - +0.7 1,475,118 - -1.5 1,475,118 - -1.0 1,475,138 + -0.2 1,475,138 + +0.2 1,475,138 + -0.5 1,475,738 + -0.4 1,475,738 + -1.1 1,475,773 + -0.5 1,475,774 - +0.2 1,475,781 + +0.0 1,475,781 + +0.5 1,475,781 + -0.4 1,475,781 + -0.2 1,475,781 + +0.3 1,475,781 + -0.5 1,475,781 + +1.6 1,475,781 + -1.8 1,475,782 - +1.1 1,475,782 - +0.5 1,475,782 - -0.1 1,475,782 - +1.2 1,475,782 - -0.1 1,475,901 + -0.6 1,475,902 - +0.1
Or see this region's nucleotide sequence