Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06190 and ABZR87_RS06195 are separated by 1 nucleotides ABZR87_RS06195 and ABZR87_RS06200 are separated by 14 nucleotides
ABZR87_RS06190: ABZR87_RS06190 - enoyl-CoA hydratase/isomerase family protein, at 1,320,209 to 1,320,982
_RS06190
ABZR87_RS06195: ABZR87_RS06195 - acyclic terpene utilization AtuA family protein, at 1,320,984 to 1,322,756
_RS06195
ABZR87_RS06200: ABZR87_RS06200 - acyl-CoA dehydrogenase family protein, at 1,322,771 to 1,323,925
_RS06200
Position (kb)
1320
1321
1322
1323 Strain fitness (log2 ratio)
-2
-1
0
1 at 1320.056 kb on + strand at 1320.057 kb on - strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.059 kb on - strand at 1320.059 kb on - strand at 1320.059 kb on - strand at 1320.771 kb on + strand, within ABZR87_RS06190 at 1320.771 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.834 kb on - strand, within ABZR87_RS06190 at 1321.095 kb on + strand at 1321.096 kb on - strand at 1321.158 kb on + strand at 1321.159 kb on - strand at 1321.431 kb on + strand, within ABZR87_RS06195 at 1321.561 kb on - strand, within ABZR87_RS06195 at 1321.561 kb on - strand, within ABZR87_RS06195 at 1321.777 kb on - strand, within ABZR87_RS06195 at 1321.800 kb on + strand, within ABZR87_RS06195 at 1321.801 kb on - strand, within ABZR87_RS06195 at 1321.801 kb on - strand, within ABZR87_RS06195 at 1321.801 kb on - strand, within ABZR87_RS06195 at 1321.908 kb on + strand, within ABZR87_RS06195 at 1321.908 kb on + strand, within ABZR87_RS06195 at 1321.909 kb on - strand, within ABZR87_RS06195 at 1321.909 kb on - strand, within ABZR87_RS06195 at 1321.926 kb on + strand, within ABZR87_RS06195 at 1321.926 kb on + strand, within ABZR87_RS06195 at 1321.927 kb on - strand, within ABZR87_RS06195 at 1321.927 kb on - strand, within ABZR87_RS06195 at 1322.059 kb on - strand, within ABZR87_RS06195 at 1322.094 kb on + strand, within ABZR87_RS06195 at 1322.094 kb on + strand, within ABZR87_RS06195 at 1322.095 kb on - strand, within ABZR87_RS06195 at 1322.095 kb on - strand, within ABZR87_RS06195 at 1322.095 kb on - strand, within ABZR87_RS06195 at 1322.095 kb on - strand, within ABZR87_RS06195 at 1322.096 kb on - strand, within ABZR87_RS06195 at 1322.280 kb on + strand, within ABZR87_RS06195 at 1322.280 kb on + strand, within ABZR87_RS06195 at 1322.280 kb on + strand, within ABZR87_RS06195 at 1322.457 kb on + strand, within ABZR87_RS06195 at 1322.605 kb on - strand at 1322.818 kb on + strand at 1322.963 kb on + strand, within ABZR87_RS06200 at 1322.963 kb on + strand, within ABZR87_RS06200 at 1322.964 kb on - strand, within ABZR87_RS06200 at 1323.230 kb on + strand, within ABZR87_RS06200 at 1323.230 kb on + strand, within ABZR87_RS06200 at 1323.230 kb on + strand, within ABZR87_RS06200 at 1323.230 kb on + strand, within ABZR87_RS06200 at 1323.230 kb on + strand, within ABZR87_RS06200 at 1323.231 kb on - strand, within ABZR87_RS06200 at 1323.231 kb on - strand, within ABZR87_RS06200 at 1323.231 kb on - strand, within ABZR87_RS06200 at 1323.231 kb on - strand, within ABZR87_RS06200 at 1323.231 kb on - strand, within ABZR87_RS06200 at 1323.231 kb on - strand, within ABZR87_RS06200 at 1323.282 kb on - strand, within ABZR87_RS06200 at 1323.282 kb on - strand, within ABZR87_RS06200 at 1323.353 kb on - strand, within ABZR87_RS06200 at 1323.533 kb on + strand, within ABZR87_RS06200 at 1323.533 kb on + strand, within ABZR87_RS06200 at 1323.534 kb on - strand, within ABZR87_RS06200 at 1323.534 kb on - strand, within ABZR87_RS06200
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,320,056 + -0.4 1,320,057 - -0.1 1,320,058 + -0.9 1,320,058 + +0.4 1,320,058 + -0.5 1,320,058 + +1.0 1,320,058 + +0.5 1,320,058 + -0.6 1,320,058 + +0.1 1,320,058 + -0.0 1,320,059 - -1.2 1,320,059 - +0.8 1,320,059 - -0.0 1,320,771 + ABZR87_RS06190 0.73 -0.1 1,320,771 + ABZR87_RS06190 0.73 -1.8 1,320,833 + ABZR87_RS06190 0.81 -1.1 1,320,833 + ABZR87_RS06190 0.81 -0.3 1,320,833 + ABZR87_RS06190 0.81 -1.3 1,320,833 + ABZR87_RS06190 0.81 -1.3 1,320,834 - ABZR87_RS06190 0.81 -0.2 1,321,095 + -0.4 1,321,096 - -1.0 1,321,158 + +0.1 1,321,159 - +0.9 1,321,431 + ABZR87_RS06195 0.25 -0.9 1,321,561 - ABZR87_RS06195 0.33 +1.6 1,321,561 - ABZR87_RS06195 0.33 +0.5 1,321,777 - ABZR87_RS06195 0.45 -0.1 1,321,800 + ABZR87_RS06195 0.46 +0.6 1,321,801 - ABZR87_RS06195 0.46 -0.6 1,321,801 - ABZR87_RS06195 0.46 -0.7 1,321,801 - ABZR87_RS06195 0.46 -0.9 1,321,908 + ABZR87_RS06195 0.52 -1.1 1,321,908 + ABZR87_RS06195 0.52 -1.1 1,321,909 - ABZR87_RS06195 0.52 +0.0 1,321,909 - ABZR87_RS06195 0.52 +0.5 1,321,926 + ABZR87_RS06195 0.53 +0.5 1,321,926 + ABZR87_RS06195 0.53 +0.3 1,321,927 - ABZR87_RS06195 0.53 +0.9 1,321,927 - ABZR87_RS06195 0.53 +0.1 1,322,059 - ABZR87_RS06195 0.61 +0.7 1,322,094 + ABZR87_RS06195 0.63 +0.0 1,322,094 + ABZR87_RS06195 0.63 -1.0 1,322,095 - ABZR87_RS06195 0.63 +0.6 1,322,095 - ABZR87_RS06195 0.63 +0.3 1,322,095 - ABZR87_RS06195 0.63 +0.0 1,322,095 - ABZR87_RS06195 0.63 +0.1 1,322,096 - ABZR87_RS06195 0.63 -0.3 1,322,280 + ABZR87_RS06195 0.73 -0.3 1,322,280 + ABZR87_RS06195 0.73 +0.9 1,322,280 + ABZR87_RS06195 0.73 +0.2 1,322,457 + ABZR87_RS06195 0.83 +0.3 1,322,605 - -0.4 1,322,818 + -0.1 1,322,963 + ABZR87_RS06200 0.17 +1.0 1,322,963 + ABZR87_RS06200 0.17 -2.5 1,322,964 - ABZR87_RS06200 0.17 +0.3 1,323,230 + ABZR87_RS06200 0.40 -0.7 1,323,230 + ABZR87_RS06200 0.40 -0.2 1,323,230 + ABZR87_RS06200 0.40 +0.9 1,323,230 + ABZR87_RS06200 0.40 -1.1 1,323,230 + ABZR87_RS06200 0.40 +0.0 1,323,231 - ABZR87_RS06200 0.40 -0.3 1,323,231 - ABZR87_RS06200 0.40 +0.1 1,323,231 - ABZR87_RS06200 0.40 -0.8 1,323,231 - ABZR87_RS06200 0.40 +0.0 1,323,231 - ABZR87_RS06200 0.40 +0.4 1,323,231 - ABZR87_RS06200 0.40 +0.4 1,323,282 - ABZR87_RS06200 0.44 -1.3 1,323,282 - ABZR87_RS06200 0.44 +0.8 1,323,353 - ABZR87_RS06200 0.50 -0.1 1,323,533 + ABZR87_RS06200 0.66 -0.1 1,323,533 + ABZR87_RS06200 0.66 +0.3 1,323,534 - ABZR87_RS06200 0.66 -0.2 1,323,534 - ABZR87_RS06200 0.66 -0.1
Or see this region's nucleotide sequence