Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05360 and ABZR87_RS05365 are separated by 6 nucleotides ABZR87_RS05365 and ABZR87_RS05370 overlap by 4 nucleotides ABZR87_RS05370 and ABZR87_RS05375 are separated by 62 nucleotides ABZR87_RS05375 and ABZR87_RS05380 are separated by 629 nucleotides
ABZR87_RS05360: ABZR87_RS05360 - membrane protein insertase YidC, at 1,128,408 to 1,130,072
_RS05360
ABZR87_RS05365: ABZR87_RS05365 - membrane protein insertion efficiency factor YidD, at 1,130,079 to 1,130,393
_RS05365
ABZR87_RS05370: ABZR87_RS05370 - ribonuclease P protein component, at 1,130,390 to 1,130,812
_RS05370
ABZR87_RS05375: ABZR87_RS05375 - 50S ribosomal protein L34, at 1,130,875 to 1,131,009
_RS05375
ABZR87_RS05380: ABZR87_RS05380 - chromosomal replication initiator protein DnaA, at 1,131,639 to 1,133,228
_RS05380
Position (kb)
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1130.081 kb on - strand at 1130.200 kb on + strand, within ABZR87_RS05365 at 1130.200 kb on + strand, within ABZR87_RS05365 at 1130.233 kb on - strand, within ABZR87_RS05365 at 1130.233 kb on - strand, within ABZR87_RS05365 at 1130.233 kb on - strand, within ABZR87_RS05365 at 1130.251 kb on + strand, within ABZR87_RS05365 at 1130.251 kb on + strand, within ABZR87_RS05365 at 1130.251 kb on + strand, within ABZR87_RS05365 at 1130.252 kb on - strand, within ABZR87_RS05365 at 1130.252 kb on - strand, within ABZR87_RS05365 at 1130.252 kb on - strand, within ABZR87_RS05365 at 1130.359 kb on + strand, within ABZR87_RS05365 at 1130.359 kb on + strand, within ABZR87_RS05365 at 1130.360 kb on - strand, within ABZR87_RS05365 at 1130.360 kb on - strand, within ABZR87_RS05365 at 1130.360 kb on - strand, within ABZR87_RS05365 at 1130.360 kb on - strand, within ABZR87_RS05365 at 1130.360 kb on - strand, within ABZR87_RS05365 at 1130.360 kb on - strand, within ABZR87_RS05365 at 1130.876 kb on + strand at 1130.876 kb on + strand at 1130.876 kb on + strand at 1130.876 kb on + strand at 1130.876 kb on + strand at 1131.129 kb on - strand at 1131.129 kb on - strand at 1131.129 kb on - strand at 1131.129 kb on - strand at 1131.144 kb on - strand at 1131.144 kb on - strand at 1131.144 kb on - strand at 1131.144 kb on - strand at 1131.433 kb on + strand at 1131.453 kb on + strand at 1131.454 kb on - strand at 1131.454 kb on - strand at 1131.487 kb on + strand at 1131.501 kb on - strand at 1131.517 kb on + strand at 1131.518 kb on - strand at 1131.518 kb on - strand at 1131.518 kb on - strand at 1131.628 kb on + strand at 1131.628 kb on + strand at 1131.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 1,130,081 - -0.6 1,130,200 + ABZR87_RS05365 0.38 +0.2 1,130,200 + ABZR87_RS05365 0.38 -0.5 1,130,233 - ABZR87_RS05365 0.49 +0.1 1,130,233 - ABZR87_RS05365 0.49 +0.1 1,130,233 - ABZR87_RS05365 0.49 -0.8 1,130,251 + ABZR87_RS05365 0.55 -0.8 1,130,251 + ABZR87_RS05365 0.55 -1.8 1,130,251 + ABZR87_RS05365 0.55 +0.3 1,130,252 - ABZR87_RS05365 0.55 +0.4 1,130,252 - ABZR87_RS05365 0.55 +1.0 1,130,252 - ABZR87_RS05365 0.55 -0.2 1,130,359 + ABZR87_RS05365 0.89 -0.6 1,130,359 + ABZR87_RS05365 0.89 -0.4 1,130,360 - ABZR87_RS05365 0.89 -0.5 1,130,360 - ABZR87_RS05365 0.89 -0.4 1,130,360 - ABZR87_RS05365 0.89 -1.0 1,130,360 - ABZR87_RS05365 0.89 -0.3 1,130,360 - ABZR87_RS05365 0.89 -2.2 1,130,360 - ABZR87_RS05365 0.89 -0.4 1,130,876 + -0.7 1,130,876 + +0.3 1,130,876 + -0.5 1,130,876 + -2.8 1,130,876 + -2.2 1,131,129 - -1.5 1,131,129 - +0.3 1,131,129 - -1.2 1,131,129 - -2.2 1,131,144 - -0.8 1,131,144 - -2.0 1,131,144 - +0.0 1,131,144 - -0.3 1,131,433 + -0.6 1,131,453 + -0.5 1,131,454 - +0.5 1,131,454 - +1.3 1,131,487 + +0.1 1,131,501 - -0.8 1,131,517 + -2.5 1,131,518 - -0.0 1,131,518 - -0.1 1,131,518 - +0.3 1,131,628 + -0.8 1,131,628 + -1.4 1,131,628 + +0.8
Or see this region's nucleotide sequence