Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04135

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04130 and ABZR87_RS04135 are separated by 86 nucleotidesABZR87_RS04135 and ABZR87_RS04140 are separated by 75 nucleotides ABZR87_RS04130: ABZR87_RS04130 - LysR family transcriptional regulator, at 866,319 to 867,239 _RS04130 ABZR87_RS04135: ABZR87_RS04135 - aldo/keto reductase, at 867,326 to 868,339 _RS04135 ABZR87_RS04140: ABZR87_RS04140 - ABC transporter substrate-binding protein, at 868,415 to 869,563 _RS04140 Position (kb) 867 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.393 kb on - strandat 866.393 kb on - strandat 866.393 kb on - strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.408 kb on - strandat 866.408 kb on - strandat 866.408 kb on - strandat 866.408 kb on - strandat 866.610 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.612 kb on - strand, within ABZR87_RS04130at 866.612 kb on - strand, within ABZR87_RS04130at 866.612 kb on - strand, within ABZR87_RS04130at 866.646 kb on - strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.702 kb on - strand, within ABZR87_RS04130at 866.702 kb on - strand, within ABZR87_RS04130at 866.702 kb on - strand, within ABZR87_RS04130at 866.824 kb on - strand, within ABZR87_RS04130at 866.863 kb on + strand, within ABZR87_RS04130at 866.863 kb on + strand, within ABZR87_RS04130at 866.908 kb on + strand, within ABZR87_RS04130at 866.909 kb on - strand, within ABZR87_RS04130at 866.986 kb on + strand, within ABZR87_RS04130at 866.986 kb on + strand, within ABZR87_RS04130at 866.986 kb on + strand, within ABZR87_RS04130at 866.987 kb on - strand, within ABZR87_RS04130at 867.062 kb on + strand, within ABZR87_RS04130at 867.062 kb on + strand, within ABZR87_RS04130at 867.062 kb on + strand, within ABZR87_RS04130at 867.230 kb on - strandat 867.239 kb on + strandat 867.239 kb on + strandat 867.239 kb on + strandat 867.239 kb on + strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.254 kb on + strandat 867.254 kb on + strandat 867.262 kb on + strandat 867.262 kb on + strandat 867.262 kb on + strandat 867.263 kb on - strandat 867.284 kb on + strandat 867.284 kb on + strandat 867.285 kb on - strandat 867.413 kb on + strandat 867.413 kb on + strandat 867.413 kb on + strandat 867.413 kb on + strandat 867.413 kb on + strandat 867.413 kb on + strandat 867.414 kb on - strandat 867.414 kb on - strandat 867.414 kb on - strandat 867.414 kb on - strandat 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.705 kb on - strand, within ABZR87_RS04135at 867.705 kb on - strand, within ABZR87_RS04135at 867.808 kb on + strand, within ABZR87_RS04135at 867.808 kb on + strand, within ABZR87_RS04135at 867.887 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.930 kb on - strand, within ABZR87_RS04135at 867.962 kb on + strand, within ABZR87_RS04135at 867.963 kb on - strand, within ABZR87_RS04135at 867.963 kb on - strand, within ABZR87_RS04135at 868.408 kb on + strandat 868.408 kb on + strandat 868.408 kb on + strandat 868.409 kb on - strandat 868.409 kb on - strandat 868.409 kb on - strandat 868.501 kb on + strandat 868.501 kb on + strandat 868.501 kb on + strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.677 kb on + strand, within ABZR87_RS04140at 868.677 kb on + strand, within ABZR87_RS04140at 868.678 kb on - strand, within ABZR87_RS04140at 868.678 kb on - strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.701 kb on + strand, within ABZR87_RS04140at 868.701 kb on + strand, within ABZR87_RS04140at 868.701 kb on + strand, within ABZR87_RS04140at 868.702 kb on - strand, within ABZR87_RS04140at 868.842 kb on + strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.857 kb on + strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.900 kb on + strand, within ABZR87_RS04140at 868.900 kb on + strand, within ABZR87_RS04140at 868.901 kb on - strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.973 kb on - strand, within ABZR87_RS04140at 869.061 kb on + strand, within ABZR87_RS04140at 869.061 kb on + strand, within ABZR87_RS04140at 869.061 kb on + strand, within ABZR87_RS04140at 869.062 kb on - strand, within ABZR87_RS04140at 869.062 kb on - strand, within ABZR87_RS04140at 869.096 kb on + strand, within ABZR87_RS04140at 869.096 kb on + strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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866,392 + +1.7
866,392 + +0.5
866,392 + +0.2
866,392 + -0.8
866,392 + +0.1
866,392 + -0.1
866,392 + -1.1
866,392 + -0.3
866,392 + -1.5
866,393 - -1.4
866,393 - +0.2
866,393 - +0.2
866,407 + +1.3
866,407 + +1.0
866,407 + -0.2
866,407 + -0.6
866,407 + -0.2
866,407 + +0.1
866,408 - -0.6
866,408 - -0.7
866,408 - -1.3
866,408 - -2.3
866,610 + ABZR87_RS04130 0.32 -0.1
866,611 + ABZR87_RS04130 0.32 -0.6
866,611 + ABZR87_RS04130 0.32 -0.4
866,611 + ABZR87_RS04130 0.32 -0.5
866,611 + ABZR87_RS04130 0.32 -0.0
866,611 + ABZR87_RS04130 0.32 +1.0
866,612 - ABZR87_RS04130 0.32 -2.3
866,612 - ABZR87_RS04130 0.32 +2.7
866,612 - ABZR87_RS04130 0.32 -2.9
866,646 - ABZR87_RS04130 0.36 -1.8
866,701 + ABZR87_RS04130 0.41 -0.9
866,701 + ABZR87_RS04130 0.41 -0.2
866,701 + ABZR87_RS04130 0.41 -1.3
866,701 + ABZR87_RS04130 0.41 +1.2
866,702 - ABZR87_RS04130 0.42 -0.1
866,702 - ABZR87_RS04130 0.42 +0.2
866,702 - ABZR87_RS04130 0.42 -0.1
866,824 - ABZR87_RS04130 0.55 -0.2
866,863 + ABZR87_RS04130 0.59 +0.1
866,863 + ABZR87_RS04130 0.59 -0.3
866,908 + ABZR87_RS04130 0.64 -0.4
866,909 - ABZR87_RS04130 0.64 +1.5
866,986 + ABZR87_RS04130 0.72 +0.4
866,986 + ABZR87_RS04130 0.72 -0.4
866,986 + ABZR87_RS04130 0.72 +0.4
866,987 - ABZR87_RS04130 0.73 +0.3
867,062 + ABZR87_RS04130 0.81 -0.1
867,062 + ABZR87_RS04130 0.81 +0.0
867,062 + ABZR87_RS04130 0.81 -2.3
867,230 - -0.1
867,239 + +0.7
867,239 + -0.5
867,239 + -0.6
867,239 + +0.9
867,240 - -0.6
867,240 - +0.3
867,240 - -0.1
867,240 - -1.7
867,240 - -0.7
867,240 - +0.3
867,254 + -0.5
867,254 + -0.1
867,262 + +0.7
867,262 + -1.0
867,262 + -0.8
867,263 - +1.3
867,284 + +0.4
867,284 + +0.5
867,285 - +0.4
867,413 + -0.1
867,413 + +0.7
867,413 + -2.4
867,413 + -0.6
867,413 + -0.6
867,413 + -1.2
867,414 - -0.4
867,414 - +0.1
867,414 - +0.5
867,414 - -0.4
867,575 + ABZR87_RS04135 0.25 +0.3
867,575 + ABZR87_RS04135 0.25 -0.2
867,575 + ABZR87_RS04135 0.25 -2.0
867,575 + ABZR87_RS04135 0.25 -1.1
867,575 + ABZR87_RS04135 0.25 -0.6
867,575 + ABZR87_RS04135 0.25 +0.3
867,575 + ABZR87_RS04135 0.25 -0.9
867,576 - ABZR87_RS04135 0.25 -0.2
867,576 - ABZR87_RS04135 0.25 +0.0
867,576 - ABZR87_RS04135 0.25 -1.0
867,576 - ABZR87_RS04135 0.25 -0.4
867,576 - ABZR87_RS04135 0.25 -1.1
867,702 + ABZR87_RS04135 0.37 -2.0
867,702 + ABZR87_RS04135 0.37 -1.1
867,702 + ABZR87_RS04135 0.37 +0.5
867,702 + ABZR87_RS04135 0.37 +0.3
867,703 - ABZR87_RS04135 0.37 -0.6
867,703 - ABZR87_RS04135 0.37 -1.8
867,703 - ABZR87_RS04135 0.37 +1.2
867,703 - ABZR87_RS04135 0.37 -0.6
867,703 - ABZR87_RS04135 0.37 -0.4
867,703 - ABZR87_RS04135 0.37 -1.0
867,704 + ABZR87_RS04135 0.37 -0.2
867,704 + ABZR87_RS04135 0.37 -1.2
867,704 + ABZR87_RS04135 0.37 +1.0
867,704 + ABZR87_RS04135 0.37 -0.4
867,704 + ABZR87_RS04135 0.37 +0.7
867,705 - ABZR87_RS04135 0.37 +0.0
867,705 - ABZR87_RS04135 0.37 -0.3
867,808 + ABZR87_RS04135 0.48 -0.8
867,808 + ABZR87_RS04135 0.48 -0.5
867,887 + ABZR87_RS04135 0.55 +0.5
867,929 + ABZR87_RS04135 0.59 -0.9
867,929 + ABZR87_RS04135 0.59 -0.4
867,929 + ABZR87_RS04135 0.59 -1.9
867,929 + ABZR87_RS04135 0.59 +0.4
867,930 - ABZR87_RS04135 0.60 -1.6
867,962 + ABZR87_RS04135 0.63 -1.4
867,963 - ABZR87_RS04135 0.63 -0.2
867,963 - ABZR87_RS04135 0.63 +0.2
868,408 + +0.4
868,408 + +0.3
868,408 + +1.0
868,409 - +0.4
868,409 - +1.0
868,409 - +0.1
868,501 + +0.4
868,501 + -0.3
868,501 + +0.6
868,502 - +0.1
868,502 - +0.2
868,502 - +0.6
868,502 - +1.3
868,502 - +0.1
868,677 + ABZR87_RS04140 0.23 +0.5
868,677 + ABZR87_RS04140 0.23 +0.5
868,678 - ABZR87_RS04140 0.23 -0.2
868,678 - ABZR87_RS04140 0.23 -1.5
868,689 + ABZR87_RS04140 0.24 -0.0
868,689 + ABZR87_RS04140 0.24 -1.1
868,689 + ABZR87_RS04140 0.24 -0.8
868,689 + ABZR87_RS04140 0.24 +0.2
868,689 + ABZR87_RS04140 0.24 -0.8
868,689 + ABZR87_RS04140 0.24 +0.8
868,689 + ABZR87_RS04140 0.24 -0.9
868,689 + ABZR87_RS04140 0.24 +0.2
868,689 + ABZR87_RS04140 0.24 +0.7
868,690 - ABZR87_RS04140 0.24 +0.1
868,690 - ABZR87_RS04140 0.24 -0.3
868,690 - ABZR87_RS04140 0.24 -0.8
868,690 - ABZR87_RS04140 0.24 -0.1
868,690 - ABZR87_RS04140 0.24 +0.6
868,701 + ABZR87_RS04140 0.25 -0.2
868,701 + ABZR87_RS04140 0.25 +0.6
868,701 + ABZR87_RS04140 0.25 -0.1
868,702 - ABZR87_RS04140 0.25 -0.8
868,842 + ABZR87_RS04140 0.37 +0.5
868,843 - ABZR87_RS04140 0.37 -0.6
868,843 - ABZR87_RS04140 0.37 -0.6
868,843 - ABZR87_RS04140 0.37 -0.2
868,843 - ABZR87_RS04140 0.37 -0.4
868,843 - ABZR87_RS04140 0.37 +0.0
868,857 + ABZR87_RS04140 0.38 -1.1
868,858 - ABZR87_RS04140 0.39 +0.9
868,858 - ABZR87_RS04140 0.39 +1.1
868,858 - ABZR87_RS04140 0.39 -0.1
868,858 - ABZR87_RS04140 0.39 +0.6
868,900 + ABZR87_RS04140 0.42 +0.2
868,900 + ABZR87_RS04140 0.42 +0.0
868,901 - ABZR87_RS04140 0.42 -0.0
868,972 + ABZR87_RS04140 0.48 +0.3
868,972 + ABZR87_RS04140 0.48 -0.5
868,972 + ABZR87_RS04140 0.48 -0.5
868,972 + ABZR87_RS04140 0.48 -0.2
868,973 - ABZR87_RS04140 0.49 -0.2
869,061 + ABZR87_RS04140 0.56 +0.2
869,061 + ABZR87_RS04140 0.56 +0.4
869,061 + ABZR87_RS04140 0.56 -0.4
869,062 - ABZR87_RS04140 0.56 -0.7
869,062 - ABZR87_RS04140 0.56 +0.2
869,096 + ABZR87_RS04140 0.59 -0.1
869,096 + ABZR87_RS04140 0.59 +0.3
869,097 - ABZR87_RS04140 0.59 -0.1
869,097 - ABZR87_RS04140 0.59 -0.0
869,097 - ABZR87_RS04140 0.59 +0.2
869,097 - ABZR87_RS04140 0.59 -0.1
869,097 - ABZR87_RS04140 0.59 +0.5

Or see this region's nucleotide sequence