Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03905

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03900 and ABZR87_RS03905 are separated by 621 nucleotidesABZR87_RS03905 and ABZR87_RS03910 are separated by 7 nucleotides ABZR87_RS03900: ABZR87_RS03900 - glycerate kinase, at 805,619 to 806,938 _RS03900 ABZR87_RS03905: ABZR87_RS03905 - pyruvate kinase, at 807,560 to 809,038 _RS03905 ABZR87_RS03910: ABZR87_RS03910 - oxygen-independent coproporphyrinogen III oxidase, at 809,046 to 810,530 _RS03910 Position (kb) 807 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2at 806.633 kb on + strand, within ABZR87_RS03900at 806.639 kb on - strand, within ABZR87_RS03900at 806.728 kb on + strand, within ABZR87_RS03900at 806.846 kb on + strandat 806.847 kb on - strandat 806.899 kb on + strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.929 kb on + strandat 806.930 kb on - strandat 807.171 kb on + strandat 807.171 kb on + strandat 807.302 kb on + strandat 807.334 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.597 kb on + strandat 807.598 kb on - strandat 807.598 kb on - strandat 807.708 kb on - strand, within ABZR87_RS03905at 807.708 kb on - strand, within ABZR87_RS03905at 807.902 kb on + strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 808.458 kb on - strand, within ABZR87_RS03905at 808.572 kb on - strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 809.419 kb on + strand, within ABZR87_RS03910at 809.419 kb on + strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.422 kb on + strand, within ABZR87_RS03910at 809.423 kb on - strand, within ABZR87_RS03910at 809.423 kb on - strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.522 kb on - strand, within ABZR87_RS03910at 809.600 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.609 kb on + strand, within ABZR87_RS03910at 809.609 kb on - strand, within ABZR87_RS03910at 809.609 kb on - strand, within ABZR87_RS03910at 809.614 kb on + strand, within ABZR87_RS03910at 809.614 kb on + strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.741 kb on - strand, within ABZR87_RS03910at 809.741 kb on - strand, within ABZR87_RS03910at 809.824 kb on + strand, within ABZR87_RS03910at 809.824 kb on + strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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806,633 + ABZR87_RS03900 0.77 +1.4
806,639 - ABZR87_RS03900 0.77 -0.4
806,728 + ABZR87_RS03900 0.84 -0.6
806,846 + -0.4
806,847 - -0.1
806,899 + -0.1
806,900 - -1.3
806,900 - -0.1
806,900 - -0.7
806,900 - -0.2
806,929 + -0.7
806,930 - -0.5
807,171 + +0.3
807,171 + +0.4
807,302 + -0.4
807,334 + +0.2
807,534 + +0.1
807,534 + +0.3
807,534 + +0.2
807,534 + -0.1
807,534 + +0.4
807,534 + +0.2
807,534 + -0.4
807,534 + -0.7
807,534 + -0.4
807,535 - -0.2
807,535 - -1.0
807,535 - -1.0
807,535 - -0.6
807,535 - -1.1
807,535 - +0.2
807,535 - +0.4
807,597 + +0.6
807,598 - -1.1
807,598 - +0.8
807,708 - ABZR87_RS03905 0.10 -0.3
807,708 - ABZR87_RS03905 0.10 -0.6
807,902 + ABZR87_RS03905 0.23 -1.4
807,903 - ABZR87_RS03905 0.23 -0.6
807,903 - ABZR87_RS03905 0.23 +1.1
807,903 - ABZR87_RS03905 0.23 -0.7
807,903 - ABZR87_RS03905 0.23 -0.9
808,458 - ABZR87_RS03905 0.61 -0.5
808,572 - ABZR87_RS03905 0.68 +0.6
808,685 + ABZR87_RS03905 0.76 -0.2
808,685 + ABZR87_RS03905 0.76 -0.4
808,685 + ABZR87_RS03905 0.76 +0.4
808,685 + ABZR87_RS03905 0.76 -0.6
808,686 - ABZR87_RS03905 0.76 -0.2
808,686 - ABZR87_RS03905 0.76 -0.2
808,686 - ABZR87_RS03905 0.76 -1.9
809,419 + ABZR87_RS03910 0.25 -0.3
809,419 + ABZR87_RS03910 0.25 -2.6
809,420 - ABZR87_RS03910 0.25 +0.3
809,420 - ABZR87_RS03910 0.25 -0.5
809,420 - ABZR87_RS03910 0.25 -0.9
809,420 - ABZR87_RS03910 0.25 -0.2
809,420 - ABZR87_RS03910 0.25 -0.4
809,422 + ABZR87_RS03910 0.25 +0.0
809,423 - ABZR87_RS03910 0.25 +0.2
809,423 - ABZR87_RS03910 0.25 -0.1
809,452 + ABZR87_RS03910 0.27 +0.3
809,452 + ABZR87_RS03910 0.27 -0.1
809,452 + ABZR87_RS03910 0.27 -0.1
809,452 + ABZR87_RS03910 0.27 +2.3
809,452 + ABZR87_RS03910 0.27 +0.5
809,452 + ABZR87_RS03910 0.27 -0.8
809,453 - ABZR87_RS03910 0.27 -1.9
809,453 - ABZR87_RS03910 0.27 -0.2
809,453 - ABZR87_RS03910 0.27 +0.4
809,453 - ABZR87_RS03910 0.27 +0.1
809,453 - ABZR87_RS03910 0.27 +0.0
809,453 - ABZR87_RS03910 0.27 +1.0
809,453 - ABZR87_RS03910 0.27 +0.7
809,522 - ABZR87_RS03910 0.32 -0.5
809,600 + ABZR87_RS03910 0.37 -0.3
809,608 + ABZR87_RS03910 0.38 -0.8
809,608 + ABZR87_RS03910 0.38 +0.1
809,608 + ABZR87_RS03910 0.38 +0.4
809,608 + ABZR87_RS03910 0.38 +0.1
809,609 + ABZR87_RS03910 0.38 +1.1
809,609 - ABZR87_RS03910 0.38 -1.0
809,609 - ABZR87_RS03910 0.38 -0.8
809,614 + ABZR87_RS03910 0.38 -0.2
809,614 + ABZR87_RS03910 0.38 +0.6
809,615 - ABZR87_RS03910 0.38 -0.9
809,615 - ABZR87_RS03910 0.38 -0.7
809,615 - ABZR87_RS03910 0.38 +0.3
809,615 - ABZR87_RS03910 0.38 +0.6
809,615 - ABZR87_RS03910 0.38 +0.3
809,734 + ABZR87_RS03910 0.46 -1.3
809,734 + ABZR87_RS03910 0.46 +0.0
809,734 + ABZR87_RS03910 0.46 -0.2
809,734 + ABZR87_RS03910 0.46 +0.3
809,734 + ABZR87_RS03910 0.46 -1.0
809,735 - ABZR87_RS03910 0.46 -1.6
809,735 - ABZR87_RS03910 0.46 -0.3
809,735 - ABZR87_RS03910 0.46 +0.5
809,735 - ABZR87_RS03910 0.46 +0.0
809,741 - ABZR87_RS03910 0.47 -0.6
809,741 - ABZR87_RS03910 0.47 -0.1
809,824 + ABZR87_RS03910 0.52 +1.5
809,824 + ABZR87_RS03910 0.52 -0.6
809,825 - ABZR87_RS03910 0.52 +0.5
809,825 - ABZR87_RS03910 0.52 -0.3
809,825 - ABZR87_RS03910 0.52 -0.2

Or see this region's nucleotide sequence