Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01970

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01965 and ABZR87_RS01970 overlap by 4 nucleotidesABZR87_RS01970 and ABZR87_RS01975 overlap by 4 nucleotidesABZR87_RS01975 and ABZR87_RS01980 are separated by 28 nucleotides ABZR87_RS01965: ABZR87_RS01965 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 418,649 to 420,193 _RS01965 ABZR87_RS01970: ABZR87_RS01970 - penicillin-binding protein 2, at 420,190 to 421,977 _RS01970 ABZR87_RS01975: ABZR87_RS01975 - cell division protein FtsL, at 421,974 to 422,318 _RS01975 ABZR87_RS01980: ABZR87_RS01980 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 422,347 to 423,306 _RS01980 Position (kb) 420 421 422Strain fitness (log2 ratio) -2 -1 0 1at 422.663 kb on - strand, within ABZR87_RS01980at 422.663 kb on - strand, within ABZR87_RS01980at 422.663 kb on - strand, within ABZR87_RS01980at 422.813 kb on - strand, within ABZR87_RS01980at 422.813 kb on - strand, within ABZR87_RS01980at 422.835 kb on - strand, within ABZR87_RS01980

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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422,663 - ABZR87_RS01980 0.33 -0.9
422,663 - ABZR87_RS01980 0.33 -0.7
422,663 - ABZR87_RS01980 0.33 -2.7
422,813 - ABZR87_RS01980 0.49 -1.2
422,813 - ABZR87_RS01980 0.49 -1.9
422,835 - ABZR87_RS01980 0.51 -0.1

Or see this region's nucleotide sequence