Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01910 and ABZR87_RS01915 are separated by 391 nucleotides ABZR87_RS01915 and ABZR87_RS01920 are separated by 140 nucleotides
ABZR87_RS01910: ABZR87_RS01910 - peroxiredoxin, at 405,180 to 405,680
_RS01910
ABZR87_RS01915: ABZR87_RS01915 - cell division protein FtsZ, at 406,072 to 407,271
_RS01915
ABZR87_RS01920: ABZR87_RS01920 - cell division protein FtsA, at 407,412 to 408,644
_RS01920
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.084 kb on + strand at 405.085 kb on - strand at 405.146 kb on + strand at 405.147 kb on - strand at 405.253 kb on - strand, within ABZR87_RS01910 at 405.281 kb on - strand, within ABZR87_RS01910 at 405.622 kb on + strand, within ABZR87_RS01910 at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 405,084 + +0.3 405,084 + +1.3 405,084 + +0.1 405,084 + +0.5 405,084 + +1.0 405,084 + +1.1 405,085 - -2.5 405,146 + +0.3 405,147 - +2.0 405,253 - ABZR87_RS01910 0.15 -1.0 405,281 - ABZR87_RS01910 0.20 +0.3 405,622 + ABZR87_RS01910 0.88 -1.4 405,717 + +0.6 405,717 + -0.0 405,717 + -0.7 405,717 + +0.1 405,717 + -0.2 405,717 + +0.1 405,717 + -0.1 405,717 + -0.0 405,717 + -0.0 405,718 - -0.7 405,718 - -0.3 405,718 - +0.2 405,718 - -0.0 405,718 - +0.4 405,718 - +0.6 405,718 - -0.4 405,718 - -0.0 405,718 - -0.6 405,718 - -1.3 405,718 - -0.2 405,751 - -0.4
Or see this region's nucleotide sequence