Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01435 and ABZR87_RS01440 are separated by 86 nucleotides ABZR87_RS01440 and ABZR87_RS01445 are separated by 115 nucleotides
ABZR87_RS01435: ABZR87_RS01435 - type I glyceraldehyde-3-phosphate dehydrogenase, at 301,190 to 302,188
_RS01435
ABZR87_RS01440: ABZR87_RS01440 - transketolase, at 302,275 to 304,290
_RS01440
ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554
_RS01445
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.230 kb on - strand at 302.276 kb on + strand at 302.277 kb on - strand at 302.277 kb on - strand at 302.277 kb on - strand at 304.381 kb on + strand at 304.381 kb on + strand at 304.382 kb on - strand at 304.382 kb on - strand at 304.382 kb on - strand at 304.407 kb on + strand at 304.407 kb on + strand at 304.408 kb on - strand at 304.408 kb on - strand at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.539 kb on + strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.540 kb on - strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.605 kb on + strand, within ABZR87_RS01445 at 304.605 kb on + strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.722 kb on + strand, within ABZR87_RS01445 at 304.723 kb on - strand, within ABZR87_RS01445 at 304.723 kb on - strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.897 kb on - strand, within ABZR87_RS01445 at 304.897 kb on - strand, within ABZR87_RS01445 at 304.934 kb on - strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.248 kb on - strand, within ABZR87_RS01445
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 302,230 - -0.1 302,276 + -1.4 302,277 - +0.8 302,277 - -0.0 302,277 - -0.3 304,381 + -0.2 304,381 + +0.1 304,382 - -1.9 304,382 - -0.2 304,382 - +0.3 304,407 + +0.3 304,407 + -1.5 304,408 - -1.8 304,408 - +0.5 304,539 + ABZR87_RS01445 0.12 +0.3 304,539 + ABZR87_RS01445 0.12 -0.3 304,539 + ABZR87_RS01445 0.12 -0.2 304,539 + ABZR87_RS01445 0.12 +0.8 304,539 + ABZR87_RS01445 0.12 +0.2 304,539 + ABZR87_RS01445 0.12 +1.0 304,540 - ABZR87_RS01445 0.12 +0.2 304,540 - ABZR87_RS01445 0.12 +0.5 304,540 - ABZR87_RS01445 0.12 -0.6 304,540 - ABZR87_RS01445 0.12 -0.0 304,540 - ABZR87_RS01445 0.12 -0.1 304,540 - ABZR87_RS01445 0.12 +1.8 304,540 - ABZR87_RS01445 0.12 -1.8 304,578 + ABZR87_RS01445 0.15 -0.9 304,578 + ABZR87_RS01445 0.15 -1.3 304,578 + ABZR87_RS01445 0.15 -1.1 304,578 + ABZR87_RS01445 0.15 -0.3 304,579 - ABZR87_RS01445 0.15 -0.6 304,579 - ABZR87_RS01445 0.15 -0.0 304,579 - ABZR87_RS01445 0.15 +0.0 304,579 - ABZR87_RS01445 0.15 +0.9 304,579 - ABZR87_RS01445 0.15 -0.3 304,605 + ABZR87_RS01445 0.17 -0.2 304,605 + ABZR87_RS01445 0.17 -0.2 304,606 - ABZR87_RS01445 0.17 -0.5 304,606 - ABZR87_RS01445 0.17 -0.1 304,606 - ABZR87_RS01445 0.17 +1.1 304,606 - ABZR87_RS01445 0.17 +0.4 304,722 + ABZR87_RS01445 0.28 -0.2 304,723 - ABZR87_RS01445 0.28 +0.0 304,723 - ABZR87_RS01445 0.28 +0.9 304,896 + ABZR87_RS01445 0.43 +1.9 304,896 + ABZR87_RS01445 0.43 +0.3 304,896 + ABZR87_RS01445 0.43 -0.0 304,896 + ABZR87_RS01445 0.43 -0.1 304,897 - ABZR87_RS01445 0.43 +1.1 304,897 - ABZR87_RS01445 0.43 -0.3 304,934 - ABZR87_RS01445 0.46 +0.1 305,205 + ABZR87_RS01445 0.70 -0.1 305,205 + ABZR87_RS01445 0.70 -0.2 305,205 + ABZR87_RS01445 0.70 +1.9 305,205 + ABZR87_RS01445 0.70 -0.8 305,206 - ABZR87_RS01445 0.70 +0.3 305,206 - ABZR87_RS01445 0.70 -0.4 305,206 - ABZR87_RS01445 0.70 +0.9 305,248 - ABZR87_RS01445 0.73 -0.2
Or see this region's nucleotide sequence