Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00785 and ABZR87_RS00790 are separated by 62 nucleotides ABZR87_RS00790 and ABZR87_RS00795 overlap by 4 nucleotides ABZR87_RS00795 and ABZR87_RS00800 are separated by 20 nucleotides
ABZR87_RS00785: ABZR87_RS00785 - tripartite tricarboxylate transporter substrate binding protein BugE, at 158,064 to 159,023
_RS00785
ABZR87_RS00790: ABZR87_RS00790 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 159,086 to 159,562
_RS00790
ABZR87_RS00795: ABZR87_RS00795 - site-specific tyrosine recombinase XerD, at 159,559 to 160,494
_RS00795
ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006
_RS00800
Position (kb) 159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.124 kb on + strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.125 kb on - strand at 158.129 kb on + strand at 158.307 kb on + strand, within ABZR87_RS00785 at 158.307 kb on + strand, within ABZR87_RS00785 at 158.373 kb on + strand, within ABZR87_RS00785 at 158.374 kb on - strand, within ABZR87_RS00785 at 158.463 kb on + strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.464 kb on - strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.505 kb on + strand, within ABZR87_RS00785 at 158.506 kb on - strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.802 kb on + strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.803 kb on - strand, within ABZR87_RS00785 at 158.934 kb on - strand at 158.934 kb on - strand at 158.934 kb on - strand at 158.946 kb on + strand at 158.946 kb on + strand at 158.947 kb on - strand at 159.021 kb on + strand at 159.048 kb on + strand at 159.049 kb on - strand at 159.049 kb on - strand at 159.173 kb on + strand, within ABZR87_RS00790 at 159.174 kb on - strand, within ABZR87_RS00790 at 159.248 kb on + strand, within ABZR87_RS00790 at 159.248 kb on + strand, within ABZR87_RS00790 at 159.249 kb on - strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.251 kb on + strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.252 kb on - strand, within ABZR87_RS00790 at 159.319 kb on - strand, within ABZR87_RS00790 at 159.319 kb on - strand, within ABZR87_RS00790 at 159.362 kb on + strand, within ABZR87_RS00790 at 159.362 kb on + strand, within ABZR87_RS00790 at 159.363 kb on - strand, within ABZR87_RS00790 at 159.363 kb on - strand, within ABZR87_RS00790 at 159.506 kb on + strand, within ABZR87_RS00790 at 159.507 kb on - strand, within ABZR87_RS00790 at 159.507 kb on - strand, within ABZR87_RS00790 at 159.558 kb on + strand at 159.558 kb on + strand at 159.558 kb on + strand at 159.559 kb on - strand at 159.673 kb on - strand, within ABZR87_RS00795 at 159.707 kb on - strand, within ABZR87_RS00795 at 159.772 kb on + strand, within ABZR87_RS00795 at 159.772 kb on + strand, within ABZR87_RS00795 at 159.826 kb on - strand, within ABZR87_RS00795 at 160.025 kb on - strand, within ABZR87_RS00795 at 160.025 kb on - strand, within ABZR87_RS00795 at 160.025 kb on - strand, within ABZR87_RS00795 at 160.273 kb on + strand, within ABZR87_RS00795 at 160.273 kb on + strand, within ABZR87_RS00795 at 160.274 kb on - strand, within ABZR87_RS00795 at 160.274 kb on - strand, within ABZR87_RS00795 at 160.288 kb on + strand, within ABZR87_RS00795 at 160.289 kb on - strand, within ABZR87_RS00795 at 160.432 kb on + strand at 160.432 kb on + strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.501 kb on + strand at 160.502 kb on - strand at 160.502 kb on - strand at 160.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 158,124 + -0.6 158,124 + +1.1 158,124 + +2.0 158,124 + -0.1 158,124 + -0.8 158,124 + -0.2 158,124 + +0.2 158,124 + -1.3 158,125 - -0.2 158,125 - -1.9 158,125 - -0.3 158,125 - +0.6 158,125 - -0.9 158,129 + +0.8 158,307 + ABZR87_RS00785 0.25 +0.1 158,307 + ABZR87_RS00785 0.25 -0.1 158,373 + ABZR87_RS00785 0.32 -0.4 158,374 - ABZR87_RS00785 0.32 +0.7 158,463 + ABZR87_RS00785 0.42 +0.7 158,464 - ABZR87_RS00785 0.42 -0.0 158,464 - ABZR87_RS00785 0.42 +0.5 158,464 - ABZR87_RS00785 0.42 +0.7 158,505 + ABZR87_RS00785 0.46 -0.3 158,505 + ABZR87_RS00785 0.46 -0.3 158,506 - ABZR87_RS00785 0.46 -0.5 158,802 + ABZR87_RS00785 0.77 -0.3 158,802 + ABZR87_RS00785 0.77 -0.3 158,803 - ABZR87_RS00785 0.77 +0.5 158,803 - ABZR87_RS00785 0.77 -0.3 158,934 - -1.5 158,934 - +0.6 158,934 - -0.0 158,946 + -0.5 158,946 + +0.2 158,947 - -0.5 159,021 + -0.5 159,048 + -0.0 159,049 - -0.7 159,049 - +0.6 159,173 + ABZR87_RS00790 0.18 -0.9 159,174 - ABZR87_RS00790 0.18 +0.3 159,248 + ABZR87_RS00790 0.34 +2.5 159,248 + ABZR87_RS00790 0.34 -0.9 159,249 - ABZR87_RS00790 0.34 -0.7 159,251 + ABZR87_RS00790 0.35 -0.6 159,251 + ABZR87_RS00790 0.35 -1.1 159,251 + ABZR87_RS00790 0.35 +0.5 159,252 - ABZR87_RS00790 0.35 -0.1 159,252 - ABZR87_RS00790 0.35 -1.4 159,252 - ABZR87_RS00790 0.35 -1.1 159,252 - ABZR87_RS00790 0.35 -0.3 159,252 - ABZR87_RS00790 0.35 -0.0 159,319 - ABZR87_RS00790 0.49 -1.4 159,319 - ABZR87_RS00790 0.49 +0.4 159,362 + ABZR87_RS00790 0.58 -1.4 159,362 + ABZR87_RS00790 0.58 +0.5 159,363 - ABZR87_RS00790 0.58 -1.1 159,363 - ABZR87_RS00790 0.58 +0.9 159,506 + ABZR87_RS00790 0.88 -0.6 159,507 - ABZR87_RS00790 0.88 -0.6 159,507 - ABZR87_RS00790 0.88 -0.6 159,558 + +0.3 159,558 + +0.2 159,558 + +1.3 159,559 - +0.9 159,673 - ABZR87_RS00795 0.12 -1.4 159,707 - ABZR87_RS00795 0.16 -1.0 159,772 + ABZR87_RS00795 0.23 -2.0 159,772 + ABZR87_RS00795 0.23 -2.6 159,826 - ABZR87_RS00795 0.29 +0.4 160,025 - ABZR87_RS00795 0.50 -1.6 160,025 - ABZR87_RS00795 0.50 +1.2 160,025 - ABZR87_RS00795 0.50 -0.6 160,273 + ABZR87_RS00795 0.76 -0.2 160,273 + ABZR87_RS00795 0.76 -2.9 160,274 - ABZR87_RS00795 0.76 -0.4 160,274 - ABZR87_RS00795 0.76 -1.7 160,288 + ABZR87_RS00795 0.78 +1.0 160,289 - ABZR87_RS00795 0.78 +1.2 160,432 + -0.8 160,432 + -0.5 160,433 - +0.5 160,433 - -1.1 160,433 - +1.2 160,433 - -0.0 160,433 - +0.6 160,501 + -0.3 160,502 - -0.8 160,502 - +0.3 160,515 - -0.0
Or see this region's nucleotide sequence