Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08675

Experiment: Glucose (C) and Ammonium chloride (N); with MOPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08670 and PFLU_RS08675 overlap by 4 nucleotidesPFLU_RS08675 and PFLU_RS08680 overlap by 4 nucleotidesPFLU_RS08680 and PFLU_RS08685 overlap by 8 nucleotides PFLU_RS08670: PFLU_RS08670 - heme lyase CcmF/NrfE family subunit, at 1,927,299 to 1,929,287 _RS08670 PFLU_RS08675: PFLU_RS08675 - DsbE family thiol:disulfide interchange protein, at 1,929,284 to 1,929,820 _RS08675 PFLU_RS08680: PFLU_RS08680 - cytochrome c-type biogenesis protein CcmH, at 1,929,817 to 1,930,290 _RS08680 PFLU_RS08685: PFLU_RS08685 - c-type cytochrome biogenesis protein CcmI, at 1,930,283 to 1,931,470 _RS08685 Position (kb) 1929 1930Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 1928.378 kb on + strand, within PFLU_RS08670at 1928.643 kb on + strand, within PFLU_RS08670at 1928.778 kb on + strand, within PFLU_RS08670at 1928.951 kb on + strand, within PFLU_RS08670at 1928.951 kb on + strand, within PFLU_RS08670at 1928.952 kb on - strand, within PFLU_RS08670at 1929.027 kb on + strand, within PFLU_RS08670at 1929.027 kb on + strand, within PFLU_RS08670at 1929.027 kb on + strand, within PFLU_RS08670at 1929.090 kb on + strandat 1929.090 kb on + strandat 1929.091 kb on - strandat 1929.091 kb on - strandat 1929.091 kb on - strandat 1929.356 kb on + strand, within PFLU_RS08675at 1929.563 kb on + strand, within PFLU_RS08675at 1929.564 kb on - strand, within PFLU_RS08675at 1929.575 kb on + strand, within PFLU_RS08675at 1929.575 kb on + strand, within PFLU_RS08675at 1929.576 kb on - strand, within PFLU_RS08675at 1929.576 kb on - strand, within PFLU_RS08675at 1929.683 kb on + strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.737 kb on + strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.738 kb on - strand, within PFLU_RS08675at 1929.889 kb on + strand, within PFLU_RS08680at 1929.889 kb on + strand, within PFLU_RS08680at 1929.890 kb on - strand, within PFLU_RS08680at 1930.409 kb on + strand, within PFLU_RS08685at 1930.410 kb on - strand, within PFLU_RS08685at 1930.410 kb on - strand, within PFLU_RS08685at 1930.455 kb on + strand, within PFLU_RS08685at 1930.455 kb on + strand, within PFLU_RS08685at 1930.610 kb on + strand, within PFLU_RS08685at 1930.610 kb on + strand, within PFLU_RS08685at 1930.611 kb on - strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.742 kb on + strand, within PFLU_RS08685at 1930.743 kb on - strand, within PFLU_RS08685at 1930.743 kb on - strand, within PFLU_RS08685at 1930.743 kb on - strand, within PFLU_RS08685at 1930.743 kb on - strand, within PFLU_RS08685at 1930.743 kb on - strand, within PFLU_RS08685at 1930.760 kb on + strand, within PFLU_RS08685at 1930.760 kb on + strand, within PFLU_RS08685at 1930.761 kb on - strand, within PFLU_RS08685at 1930.761 kb on - strand, within PFLU_RS08685at 1930.761 kb on - strand, within PFLU_RS08685at 1930.761 kb on - strand, within PFLU_RS08685

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
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1,928,378 + PFLU_RS08670 0.54 +5.8
1,928,643 + PFLU_RS08670 0.68 +6.3
1,928,778 + PFLU_RS08670 0.74 +6.7
1,928,951 + PFLU_RS08670 0.83 +7.1
1,928,951 + PFLU_RS08670 0.83 +4.4
1,928,952 - PFLU_RS08670 0.83 +5.8
1,929,027 + PFLU_RS08670 0.87 +4.8
1,929,027 + PFLU_RS08670 0.87 +4.7
1,929,027 + PFLU_RS08670 0.87 +8.0
1,929,090 + +3.6
1,929,090 + +5.5
1,929,091 - +6.7
1,929,091 - +6.7
1,929,091 - +7.6
1,929,356 + PFLU_RS08675 0.13 +5.5
1,929,563 + PFLU_RS08675 0.52 +7.2
1,929,564 - PFLU_RS08675 0.52 +5.9
1,929,575 + PFLU_RS08675 0.54 +6.0
1,929,575 + PFLU_RS08675 0.54 +6.0
1,929,576 - PFLU_RS08675 0.54 +4.7
1,929,576 - PFLU_RS08675 0.54 +5.5
1,929,683 + PFLU_RS08675 0.74 +6.6
1,929,737 + PFLU_RS08675 0.84 +4.9
1,929,737 + PFLU_RS08675 0.84 +4.4
1,929,737 + PFLU_RS08675 0.84 +6.0
1,929,738 - PFLU_RS08675 0.85 +6.7
1,929,738 - PFLU_RS08675 0.85 +4.8
1,929,738 - PFLU_RS08675 0.85 +5.6
1,929,889 + PFLU_RS08680 0.15 +6.4
1,929,889 + PFLU_RS08680 0.15 +6.0
1,929,890 - PFLU_RS08680 0.15 +1.4
1,930,409 + PFLU_RS08685 0.11 +3.5
1,930,410 - PFLU_RS08685 0.11 +5.6
1,930,410 - PFLU_RS08685 0.11 +5.8
1,930,455 + PFLU_RS08685 0.14 +3.1
1,930,455 + PFLU_RS08685 0.14 +2.3
1,930,610 + PFLU_RS08685 0.28 +4.0
1,930,610 + PFLU_RS08685 0.28 +3.7
1,930,611 - PFLU_RS08685 0.28 +3.6
1,930,742 + PFLU_RS08685 0.39 +2.4
1,930,742 + PFLU_RS08685 0.39 +5.6
1,930,742 + PFLU_RS08685 0.39 +3.8
1,930,742 + PFLU_RS08685 0.39 +2.3
1,930,742 + PFLU_RS08685 0.39 +1.7
1,930,742 + PFLU_RS08685 0.39 -0.1
1,930,742 + PFLU_RS08685 0.39 +2.0
1,930,743 - PFLU_RS08685 0.39 +3.7
1,930,743 - PFLU_RS08685 0.39 -1.2
1,930,743 - PFLU_RS08685 0.39 +2.8
1,930,743 - PFLU_RS08685 0.39 +0.2
1,930,743 - PFLU_RS08685 0.39 +2.4
1,930,760 + PFLU_RS08685 0.40 +3.8
1,930,760 + PFLU_RS08685 0.40 +1.6
1,930,761 - PFLU_RS08685 0.40 +1.4
1,930,761 - PFLU_RS08685 0.40 +1.8
1,930,761 - PFLU_RS08685 0.40 +0.1
1,930,761 - PFLU_RS08685 0.40 -1.8

Or see this region's nucleotide sequence