Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13000

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
2,710,740	+		BWI76_RS12995	0.35	-0.2
2,710,740	+		BWI76_RS12995	0.35	-0.3
2,710,740	+		BWI76_RS12995	0.35	-1.2
2,710,783	-		BWI76_RS12995	0.39	-0.3
2,710,790	-		BWI76_RS12995	0.40	-0.7
2,710,886	+		BWI76_RS12995	0.50	+0.7
2,710,902	-		BWI76_RS12995	0.51	+0.5
2,710,907	-		BWI76_RS12995	0.52	+0.7
2,710,940	+		BWI76_RS12995	0.55	-1.5
2,710,940	+		BWI76_RS12995	0.55	+0.2
2,710,948	-		BWI76_RS12995	0.56	+1.7
2,710,948	-		BWI76_RS12995	0.56	+0.7
2,710,948	-		BWI76_RS12995	0.56	+0.6
2,710,948	-				+0.3
2,710,948	-		BWI76_RS12995	0.56	+0.3
2,710,948	-		BWI76_RS12995	0.56	-1.3
2,711,018	+		BWI76_RS12995	0.63	+0.1
2,711,028	+		BWI76_RS12995	0.64	+0.8
2,711,118	+		BWI76_RS12995	0.74	+1.3
2,711,118	+		BWI76_RS12995	0.74	+0.1
2,711,126	-		BWI76_RS12995	0.75	-0.6
2,711,164	+		BWI76_RS12995	0.78	+0.5
2,711,164	+		BWI76_RS12995	0.78	-1.3
2,711,164	+		BWI76_RS12995	0.78	+0.3
2,711,172	-		BWI76_RS12995	0.79	+0.2
2,711,185	+		BWI76_RS12995	0.81	-1.3
2,711,207	+				-0.3
2,711,218	+		BWI76_RS12995	0.84	+0.8
2,711,235	+		BWI76_RS12995	0.86	+1.2
2,711,241	+		BWI76_RS12995	0.86	+0.7
2,711,283	+				-0.5
2,711,286	+				+0.3
2,711,295	-				+0.7
2,711,295	-				-0.5
2,711,336	+				+0.3
2,711,376	+				-0.0
2,711,401	-				-1.4
2,711,407	-				-0.8
2,711,408	-				+1.7
2,711,485	-				-3.2
2,711,499	+				+0.4
2,711,499	+				+1.9
2,711,507	-				-2.4
2,711,507	-				-1.0
2,711,526	+				+2.3
2,711,542	+				+0.7
2,711,543	+				+0.5
2,711,582	+				-2.4
2,711,601	+				-0.3
2,711,601	+				-0.0
2,711,631	-				+1.5
2,711,635	+				+0.7
2,711,664	+				-2.0
2,711,676	-				-1.7
2,711,676	-				+0.4
2,711,778	-		BWI76_RS13000	0.17	-0.3
2,711,794	-		BWI76_RS13000	0.19	+0.2
2,711,796	+		BWI76_RS13000	0.20	-1.0
2,711,796	+		BWI76_RS13000	0.20	-0.8
2,711,891	-		BWI76_RS13000	0.32	+0.0
2,711,898	-		BWI76_RS13000	0.32	-0.2
2,711,954	+		BWI76_RS13000	0.39	-1.2
2,712,277	-		BWI76_RS13000	0.80	+0.5
2,712,318	-		BWI76_RS13000	0.85	-0.3
2,712,346	+		BWI76_RS13000	0.88	+0.6
2,712,354	-		BWI76_RS13000	0.89	-1.7
2,712,387	+				+1.2
2,712,467	+				-1.6
2,712,467	+				-2.0
2,712,475	-				-2.2
2,712,475	-				+0.4
2,712,484	-				-0.2
2,712,557	+				+1.3
2,712,559	+				+0.3
2,712,562	+				+0.3
2,712,562	+				-0.1
2,712,562	+				-0.0
2,712,562	+				-1.1
2,712,562	+				+0.2
2,712,565	-				+0.6
2,712,570	-				-1.5
2,712,570	-				-0.3
2,712,570	-				+0.6
2,712,627	+				+1.4
2,712,635	-				+0.9
2,712,640	+				-0.4
2,712,648	-				+0.6
2,712,674	+				+1.0
2,712,682	-				-1.0
2,712,687	+				+0.1
2,712,695	-				-0.7
2,712,695	-				+0.1
2,712,695	-				+0.0
2,712,695	-				+0.5
2,712,968	+		BWI76_RS13005	0.10	-0.1
2,713,005	+		BWI76_RS13005	0.12	+1.1
2,713,122	+		BWI76_RS13005	0.19	-0.4
2,713,168	+		BWI76_RS13005	0.22	+0.2
2,713,218	+		BWI76_RS13005	0.25	+0.2
2,713,226	-		BWI76_RS13005	0.25	-0.3