Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10415

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
2,201,877	+				+1.1
2,201,933	+				+1.2
2,201,936	-				+1.1
2,201,941	-				+0.9
2,201,941	-				-0.9
2,201,941	-				-1.0
2,201,941	-				-2.7
2,201,965	-				+1.1
2,201,972	+				-2.2
2,201,986	-				-2.0
2,202,004	+				-1.2
2,202,007	+				-0.9
2,202,012	-		BWI76_RS10405	0.12	+0.1
2,202,017	+		BWI76_RS10405	0.14	-0.9
2,202,025	-		BWI76_RS10405	0.18	-0.2
2,202,027	+		BWI76_RS10405	0.18	+0.1
2,202,071	-		BWI76_RS10405	0.38	+0.4
2,202,082	-		BWI76_RS10405	0.43	+0.2
2,202,084	+		BWI76_RS10405	0.44	-0.5
2,202,086	+		BWI76_RS10405	0.45	-2.0
2,202,150	+		BWI76_RS10405	0.74	-2.2
2,202,153	+		BWI76_RS10405	0.75	-3.3
2,202,160	+		BWI76_RS10405	0.78	-0.9
2,202,161	-		BWI76_RS10405	0.79	+0.7
2,202,161	-		BWI76_RS10405	0.79	+0.6
2,202,170	+		BWI76_RS10405	0.83	-0.6
2,202,171	-		BWI76_RS10405	0.83	-0.5
2,202,175	+		BWI76_RS10405	0.85	-1.6
2,202,183	-		BWI76_RS10405	0.89	+0.6
2,202,183	-		BWI76_RS10405	0.89	-0.2
2,202,185	+				+1.4
2,202,185	+				+0.3
2,202,185	+				-0.7
2,202,185	+				-1.4
2,202,185	+				+0.1
2,202,185	+				+0.6
2,202,185	+				+0.4
2,202,193	-				-0.2
2,202,193	-				-0.9
2,202,193	-				-0.3
2,202,193	-				-0.3
2,202,193	-				-0.0
2,202,193	-				-0.5
2,202,193	-				+1.9
2,202,193	-				-1.7
2,202,193	-				+0.9
2,202,193	-				-2.1
2,202,193	-				+0.0
2,202,193	-				+0.1
2,202,193	-				-0.4
2,202,233	+				-0.4
2,202,233	+				+0.2
2,202,233	+				-0.5
2,202,233	+				-0.1
2,202,233	+				+0.6
2,202,241	-				-0.5
2,202,241	-				+0.1
2,202,254	+				+1.3
2,202,268	+				-1.3
2,202,273	+				+0.0
2,202,284	+				+0.1
2,202,299	-				-0.1
2,202,309	+				-0.2
2,202,309	+				+0.7
2,202,389	+				-0.0
2,202,394	+				-0.2
2,202,394	+				-0.2
2,202,442	-				-0.1
2,202,498	-		BWI76_RS10410	0.21	-0.5
2,202,610	-		BWI76_RS10410	0.64	+1.1
2,202,806	-				+0.8
2,202,835	+		BWI76_RS10415	0.11	-2.7
2,202,845	+		BWI76_RS10415	0.13	-1.3
2,202,979	+		BWI76_RS10415	0.49	-0.2
2,202,979	+		BWI76_RS10415	0.49	-1.6
2,203,222	-				-1.7
2,203,281	+				+0.1
2,203,281	+				-1.3
2,203,289	-				-0.2
2,203,289	-				-0.7
2,203,625	+		BWI76_RS10420	0.26	+0.7
2,203,633	-		BWI76_RS10420	0.26	+1.1
2,203,633	-		BWI76_RS10420	0.26	-0.9
2,203,672	+		BWI76_RS10420	0.30	-0.2
2,203,729	+		BWI76_RS10420	0.36	+0.7
2,203,880	+		BWI76_RS10420	0.50	-0.5