Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28730

Experiment: Carbon source D-Mannitol 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28725 and AO356_28730 are separated by 3 nucleotidesAO356_28730 and AO356_28735 are separated by 205 nucleotides AO356_28725: AO356_28725 - RND transporter, at 6,676,790 to 6,677,959 _28725 AO356_28730: AO356_28730 - acriflavine resistance protein B, at 6,677,963 to 6,681,058 _28730 AO356_28735: AO356_28735 - ureidoglycolate lyase, at 6,681,264 to 6,682,112 _28735 Position (kb) 6677 6678 6679 6680 6681 6682Strain fitness (log2 ratio) -1 0 1 2at 6677.205 kb on - strand, within AO356_28725at 6678.099 kb on - strandat 6678.191 kb on + strandat 6678.568 kb on + strand, within AO356_28730at 6678.926 kb on + strand, within AO356_28730at 6678.939 kb on - strand, within AO356_28730at 6678.983 kb on + strand, within AO356_28730at 6678.983 kb on + strand, within AO356_28730at 6679.358 kb on + strand, within AO356_28730at 6679.535 kb on + strand, within AO356_28730at 6680.216 kb on + strand, within AO356_28730at 6680.802 kb on - strandat 6681.125 kb on - strandat 6681.125 kb on - strandat 6681.703 kb on + strand, within AO356_28735

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM
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6,677,205 - AO356_28725 0.35 +0.6
6,678,099 - +0.7
6,678,191 + +2.1
6,678,568 + AO356_28730 0.20 +0.7
6,678,926 + AO356_28730 0.31 -0.4
6,678,939 - AO356_28730 0.32 -1.0
6,678,983 + AO356_28730 0.33 -0.0
6,678,983 + AO356_28730 0.33 -0.1
6,679,358 + AO356_28730 0.45 -0.0
6,679,535 + AO356_28730 0.51 -0.0
6,680,216 + AO356_28730 0.73 +0.6
6,680,802 - +0.4
6,681,125 - +0.5
6,681,125 - +1.2
6,681,703 + AO356_28735 0.52 +0.0

Or see this region's nucleotide sequence