Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27475 and AO356_27480 are separated by 296 nucleotides AO356_27480 and AO356_27485 are separated by 45 nucleotides
AO356_27475: AO356_27475 - shikimate dehydrogenase, at 6,262,114 to 6,262,938
_27475
AO356_27480: AO356_27480 - hypothetical protein, at 6,263,235 to 6,264,242
_27480
AO356_27485: AO356_27485 - hypothetical protein, at 6,264,288 to 6,265,094
_27485
Position (kb)
6263
6264
6265 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6262.250 kb on + strand, within AO356_27475 at 6262.250 kb on + strand, within AO356_27475 at 6262.251 kb on - strand, within AO356_27475 at 6262.251 kb on - strand, within AO356_27475 at 6262.254 kb on + strand, within AO356_27475 at 6262.255 kb on - strand, within AO356_27475 at 6262.255 kb on - strand, within AO356_27475 at 6262.460 kb on + strand, within AO356_27475 at 6262.512 kb on + strand, within AO356_27475 at 6262.514 kb on + strand, within AO356_27475 at 6262.515 kb on - strand, within AO356_27475 at 6262.620 kb on - strand, within AO356_27475 at 6262.654 kb on + strand, within AO356_27475 at 6262.655 kb on - strand, within AO356_27475 at 6262.738 kb on - strand, within AO356_27475 at 6262.740 kb on - strand, within AO356_27475 at 6262.779 kb on + strand, within AO356_27475 at 6262.936 kb on + strand at 6262.936 kb on + strand at 6262.954 kb on + strand at 6262.954 kb on + strand at 6263.127 kb on + strand at 6263.160 kb on + strand at 6263.163 kb on - strand at 6263.211 kb on + strand at 6263.212 kb on - strand at 6263.212 kb on - strand at 6263.220 kb on - strand at 6263.221 kb on + strand at 6263.258 kb on - strand at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.525 kb on + strand, within AO356_27480 at 6263.614 kb on + strand, within AO356_27480 at 6263.615 kb on - strand, within AO356_27480 at 6263.704 kb on - strand, within AO356_27480 at 6263.759 kb on + strand, within AO356_27480 at 6263.759 kb on + strand, within AO356_27480 at 6263.760 kb on - strand, within AO356_27480 at 6263.818 kb on + strand, within AO356_27480 at 6263.819 kb on - strand, within AO356_27480 at 6263.997 kb on + strand, within AO356_27480 at 6263.997 kb on + strand, within AO356_27480 at 6263.998 kb on - strand, within AO356_27480 at 6264.084 kb on + strand, within AO356_27480 at 6264.085 kb on - strand, within AO356_27480 at 6264.088 kb on - strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.192 kb on + strand at 6264.407 kb on - strand, within AO356_27485 at 6264.432 kb on + strand, within AO356_27485 at 6264.432 kb on + strand, within AO356_27485 at 6264.433 kb on - strand, within AO356_27485 at 6264.904 kb on + strand, within AO356_27485 at 6265.102 kb on + strand at 6265.103 kb on - strand at 6265.103 kb on - strand at 6265.168 kb on + strand at 6265.168 kb on + strand at 6265.179 kb on + strand at 6265.179 kb on + strand at 6265.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 6,262,250 + AO356_27475 0.16 +1.0 6,262,250 + AO356_27475 0.16 +0.2 6,262,251 - AO356_27475 0.17 -1.6 6,262,251 - AO356_27475 0.17 +2.4 6,262,254 + AO356_27475 0.17 -0.3 6,262,255 - AO356_27475 0.17 +1.0 6,262,255 - AO356_27475 0.17 -0.7 6,262,460 + AO356_27475 0.42 +0.2 6,262,512 + AO356_27475 0.48 +0.3 6,262,514 + AO356_27475 0.48 +0.7 6,262,515 - AO356_27475 0.49 +0.5 6,262,620 - AO356_27475 0.61 +0.3 6,262,654 + AO356_27475 0.65 -0.1 6,262,655 - AO356_27475 0.66 -0.6 6,262,738 - AO356_27475 0.76 +2.5 6,262,740 - AO356_27475 0.76 +2.0 6,262,779 + AO356_27475 0.81 +1.0 6,262,936 + +0.7 6,262,936 + -0.5 6,262,954 + +0.3 6,262,954 + -0.1 6,263,127 + -0.3 6,263,160 + +0.3 6,263,163 - +0.9 6,263,211 + +0.2 6,263,212 - -1.5 6,263,212 - +2.2 6,263,220 - +0.6 6,263,221 + +3.3 6,263,258 - +0.7 6,263,460 + AO356_27480 0.22 -0.6 6,263,460 + AO356_27480 0.22 +0.6 6,263,460 + AO356_27480 0.22 +1.3 6,263,460 + AO356_27480 0.22 +0.8 6,263,460 + AO356_27480 0.22 -0.2 6,263,460 + AO356_27480 0.22 +0.6 6,263,460 + AO356_27480 0.22 +0.6 6,263,461 - AO356_27480 0.22 +0.4 6,263,461 - AO356_27480 0.22 -0.4 6,263,461 - AO356_27480 0.22 -0.6 6,263,461 - AO356_27480 0.22 +0.4 6,263,525 + AO356_27480 0.29 -0.1 6,263,614 + AO356_27480 0.38 -0.5 6,263,615 - AO356_27480 0.38 -0.8 6,263,704 - AO356_27480 0.47 -1.3 6,263,759 + AO356_27480 0.52 +0.2 6,263,759 + AO356_27480 0.52 +1.4 6,263,760 - AO356_27480 0.52 -1.0 6,263,818 + AO356_27480 0.58 +0.5 6,263,819 - AO356_27480 0.58 -0.3 6,263,997 + AO356_27480 0.76 -0.1 6,263,997 + AO356_27480 0.76 +0.8 6,263,998 - AO356_27480 0.76 -0.4 6,264,084 + AO356_27480 0.84 +2.2 6,264,085 - AO356_27480 0.84 -0.6 6,264,088 - AO356_27480 0.85 -2.2 6,264,135 + AO356_27480 0.89 -0.2 6,264,135 + AO356_27480 0.89 +0.6 6,264,135 + AO356_27480 0.89 +1.2 6,264,135 + AO356_27480 0.89 +1.7 6,264,192 + -2.1 6,264,407 - AO356_27485 0.15 +1.0 6,264,432 + AO356_27485 0.18 -0.9 6,264,432 + AO356_27485 0.18 -1.6 6,264,433 - AO356_27485 0.18 +0.6 6,264,904 + AO356_27485 0.76 -0.1 6,265,102 + -0.5 6,265,103 - +1.8 6,265,103 - -0.2 6,265,168 + +0.1 6,265,168 + +1.4 6,265,179 + +0.0 6,265,179 + -0.5 6,265,228 - +1.5
Or see this region's nucleotide sequence