Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03445 and AO356_03450 are separated by 120 nucleotides AO356_03450 and AO356_03455 overlap by 4 nucleotides AO356_03455 and AO356_03460 are separated by 28 nucleotides
AO356_03445: AO356_03445 - 30S ribosomal protein S1, at 765,218 to 766,912
_03445
AO356_03450: AO356_03450 - cytidylate kinase, at 767,033 to 767,722
_03450
AO356_03455: AO356_03455 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 767,719 to 769,926
_03455
AO356_03460: AO356_03460 - aspartate aminotransferase, at 769,955 to 771,067
_03460
Position (kb) 767
768
769
770 Strain fitness (log2 ratio) -2
-1
0
1 at 769.053 kb on - strand, within AO356_03455 at 769.053 kb on - strand, within AO356_03455 at 769.382 kb on - strand, within AO356_03455 at 769.590 kb on + strand, within AO356_03455 at 769.926 kb on + strand at 770.050 kb on - strand at 770.050 kb on - strand at 770.050 kb on - strand at 770.097 kb on + strand, within AO356_03460 at 770.098 kb on - strand, within AO356_03460 at 770.236 kb on - strand, within AO356_03460 at 770.374 kb on - strand, within AO356_03460 at 770.461 kb on - strand, within AO356_03460 at 770.461 kb on - strand, within AO356_03460 at 770.470 kb on - strand, within AO356_03460 at 770.470 kb on - strand, within AO356_03460 at 770.470 kb on - strand, within AO356_03460 at 770.692 kb on - strand, within AO356_03460 at 770.743 kb on - strand, within AO356_03460 at 770.743 kb on - strand, within AO356_03460
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 769,053 - AO356_03455 0.60 -2.1 769,053 - AO356_03455 0.60 -0.5 769,382 - AO356_03455 0.75 +0.1 769,590 + AO356_03455 0.85 -0.5 769,926 + -0.3 770,050 - +0.2 770,050 - +1.1 770,050 - +0.5 770,097 + AO356_03460 0.13 +0.2 770,098 - AO356_03460 0.13 -0.0 770,236 - AO356_03460 0.25 +0.7 770,374 - AO356_03460 0.38 -0.4 770,461 - AO356_03460 0.45 -0.4 770,461 - AO356_03460 0.45 -0.5 770,470 - AO356_03460 0.46 -0.9 770,470 - AO356_03460 0.46 -1.7 770,470 - AO356_03460 0.46 +1.5 770,692 - AO356_03460 0.66 -0.3 770,743 - AO356_03460 0.71 -0.6 770,743 - AO356_03460 0.71 -1.8
Or see this region's nucleotide sequence