Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21895

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21885 and ABZR87_RS21890 are separated by 126 nucleotidesABZR87_RS21890 and ABZR87_RS21895 are separated by 12 nucleotidesABZR87_RS21895 and ABZR87_RS21900 are separated by 101 nucleotidesABZR87_RS21900 and ABZR87_RS21905 are separated by 183 nucleotides ABZR87_RS21885: ABZR87_RS21885 - SDR family oxidoreductase, at 1,288,283 to 1,289,047 _RS21885 ABZR87_RS21890: ABZR87_RS21890 - hypothetical protein, at 1,289,174 to 1,289,443 _RS21890 ABZR87_RS21895: ABZR87_RS21895 - LysR family transcriptional regulator, at 1,289,456 to 1,290,322 _RS21895 ABZR87_RS21900: ABZR87_RS21900 - LysE family transporter, at 1,290,424 to 1,291,050 _RS21900 ABZR87_RS21905: ABZR87_RS21905 - hypothetical protein, at 1,291,234 to 1,292,289 _RS21905 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1288.617 kb on - strand, within ABZR87_RS21885at 1288.760 kb on + strand, within ABZR87_RS21885at 1288.760 kb on + strand, within ABZR87_RS21885at 1288.760 kb on + strand, within ABZR87_RS21885at 1288.760 kb on + strand, within ABZR87_RS21885at 1288.760 kb on + strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.761 kb on - strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.904 kb on + strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.905 kb on - strand, within ABZR87_RS21885at 1288.976 kb on + strandat 1288.976 kb on + strandat 1288.976 kb on + strandat 1288.976 kb on + strandat 1288.977 kb on - strandat 1288.977 kb on - strandat 1289.000 kb on + strandat 1289.001 kb on - strandat 1289.001 kb on - strandat 1289.001 kb on - strandat 1289.001 kb on - strandat 1289.001 kb on - strandat 1289.001 kb on - strandat 1289.060 kb on - strandat 1289.060 kb on - strandat 1289.060 kb on - strandat 1289.089 kb on - strandat 1289.135 kb on + strandat 1289.135 kb on + strandat 1289.135 kb on + strandat 1289.135 kb on + strandat 1289.136 kb on - strandat 1289.139 kb on + strandat 1289.149 kb on - strandat 1289.204 kb on + strand, within ABZR87_RS21890at 1289.205 kb on - strand, within ABZR87_RS21890at 1289.297 kb on + strand, within ABZR87_RS21890at 1289.297 kb on + strand, within ABZR87_RS21890at 1289.298 kb on - strand, within ABZR87_RS21890at 1289.298 kb on - strand, within ABZR87_RS21890at 1289.298 kb on - strand, within ABZR87_RS21890at 1289.298 kb on - strand, within ABZR87_RS21890at 1289.393 kb on + strand, within ABZR87_RS21890at 1289.393 kb on + strand, within ABZR87_RS21890at 1289.393 kb on + strand, within ABZR87_RS21890at 1289.393 kb on + strand, within ABZR87_RS21890at 1289.393 kb on + strand, within ABZR87_RS21890at 1289.394 kb on - strand, within ABZR87_RS21890at 1289.394 kb on - strand, within ABZR87_RS21890at 1289.394 kb on - strand, within ABZR87_RS21890at 1289.530 kb on + strandat 1289.530 kb on + strandat 1289.531 kb on - strandat 1289.531 kb on - strandat 1289.531 kb on - strandat 1289.531 kb on - strandat 1289.550 kb on + strand, within ABZR87_RS21895at 1289.550 kb on + strand, within ABZR87_RS21895at 1289.550 kb on + strand, within ABZR87_RS21895at 1289.550 kb on + strand, within ABZR87_RS21895at 1289.550 kb on + strand, within ABZR87_RS21895at 1289.551 kb on - strand, within ABZR87_RS21895at 1289.551 kb on - strand, within ABZR87_RS21895at 1289.551 kb on - strand, within ABZR87_RS21895at 1289.554 kb on - strand, within ABZR87_RS21895at 1289.554 kb on - strand, within ABZR87_RS21895at 1289.679 kb on + strand, within ABZR87_RS21895at 1289.679 kb on + strand, within ABZR87_RS21895at 1289.680 kb on - strand, within ABZR87_RS21895at 1289.680 kb on - strand, within ABZR87_RS21895at 1289.691 kb on + strand, within ABZR87_RS21895at 1289.691 kb on + strand, within ABZR87_RS21895at 1289.692 kb on - strand, within ABZR87_RS21895at 1290.082 kb on + strand, within ABZR87_RS21895at 1290.083 kb on - strand, within ABZR87_RS21895at 1290.206 kb on + strand, within ABZR87_RS21895at 1290.206 kb on + strand, within ABZR87_RS21895at 1290.206 kb on + strand, within ABZR87_RS21895at 1290.207 kb on - strand, within ABZR87_RS21895at 1290.207 kb on - strand, within ABZR87_RS21895at 1290.217 kb on + strand, within ABZR87_RS21895at 1290.218 kb on - strand, within ABZR87_RS21895at 1290.218 kb on - strand, within ABZR87_RS21895at 1290.218 kb on - strand, within ABZR87_RS21895at 1290.218 kb on - strand, within ABZR87_RS21895at 1290.218 kb on - strand, within ABZR87_RS21895at 1290.302 kb on - strandat 1290.302 kb on - strandat 1290.302 kb on - strandat 1290.355 kb on + strandat 1290.355 kb on + strandat 1290.583 kb on + strand, within ABZR87_RS21900at 1290.583 kb on + strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.585 kb on + strand, within ABZR87_RS21900at 1290.586 kb on - strand, within ABZR87_RS21900at 1290.586 kb on - strand, within ABZR87_RS21900at 1290.586 kb on - strand, within ABZR87_RS21900at 1290.661 kb on + strand, within ABZR87_RS21900at 1290.662 kb on - strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1291.116 kb on - strandat 1291.286 kb on - strandat 1291.286 kb on - strandat 1291.286 kb on - strandat 1291.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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1,288,617 - ABZR87_RS21885 0.44 +0.4
1,288,760 + ABZR87_RS21885 0.62 -0.4
1,288,760 + ABZR87_RS21885 0.62 -0.6
1,288,760 + ABZR87_RS21885 0.62 +0.2
1,288,760 + ABZR87_RS21885 0.62 +0.0
1,288,760 + ABZR87_RS21885 0.62 +0.3
1,288,761 - ABZR87_RS21885 0.62 -0.2
1,288,761 - ABZR87_RS21885 0.62 -0.2
1,288,761 - ABZR87_RS21885 0.62 -0.5
1,288,761 - ABZR87_RS21885 0.62 -2.5
1,288,761 - ABZR87_RS21885 0.62 -0.2
1,288,761 - ABZR87_RS21885 0.62 +0.3
1,288,761 - ABZR87_RS21885 0.62 +0.3
1,288,761 - ABZR87_RS21885 0.62 +0.5
1,288,904 + ABZR87_RS21885 0.81 -0.4
1,288,904 + ABZR87_RS21885 0.81 -0.2
1,288,904 + ABZR87_RS21885 0.81 +3.8
1,288,904 + ABZR87_RS21885 0.81 -0.1
1,288,904 + ABZR87_RS21885 0.81 -0.4
1,288,904 + ABZR87_RS21885 0.81 -0.9
1,288,904 + ABZR87_RS21885 0.81 +1.8
1,288,904 + ABZR87_RS21885 0.81 -0.5
1,288,904 + ABZR87_RS21885 0.81 +0.2
1,288,904 + ABZR87_RS21885 0.81 +0.5
1,288,904 + ABZR87_RS21885 0.81 -1.3
1,288,905 - ABZR87_RS21885 0.81 +2.8
1,288,905 - ABZR87_RS21885 0.81 -1.4
1,288,905 - ABZR87_RS21885 0.81 -0.5
1,288,905 - ABZR87_RS21885 0.81 +0.1
1,288,905 - ABZR87_RS21885 0.81 +0.9
1,288,905 - ABZR87_RS21885 0.81 +0.1
1,288,905 - ABZR87_RS21885 0.81 -0.5
1,288,905 - ABZR87_RS21885 0.81 +0.2
1,288,905 - ABZR87_RS21885 0.81 -1.0
1,288,905 - ABZR87_RS21885 0.81 +0.5
1,288,905 - ABZR87_RS21885 0.81 +0.9
1,288,905 - ABZR87_RS21885 0.81 -0.8
1,288,976 + -0.4
1,288,976 + -0.3
1,288,976 + -0.7
1,288,976 + +0.1
1,288,977 - -0.2
1,288,977 - -0.8
1,289,000 + +1.1
1,289,001 - -0.8
1,289,001 - +0.6
1,289,001 - +0.8
1,289,001 - +0.9
1,289,001 - +1.0
1,289,001 - -0.5
1,289,060 - -0.5
1,289,060 - -1.2
1,289,060 - +0.6
1,289,089 - +1.0
1,289,135 + +0.9
1,289,135 + -0.8
1,289,135 + +0.2
1,289,135 + -0.9
1,289,136 - +0.9
1,289,139 + +0.2
1,289,149 - -1.7
1,289,204 + ABZR87_RS21890 0.11 -1.3
1,289,205 - ABZR87_RS21890 0.11 -0.2
1,289,297 + ABZR87_RS21890 0.46 -1.6
1,289,297 + ABZR87_RS21890 0.46 -1.0
1,289,298 - ABZR87_RS21890 0.46 +0.1
1,289,298 - ABZR87_RS21890 0.46 +0.0
1,289,298 - ABZR87_RS21890 0.46 -0.3
1,289,298 - ABZR87_RS21890 0.46 +0.4
1,289,393 + ABZR87_RS21890 0.81 +0.3
1,289,393 + ABZR87_RS21890 0.81 -0.0
1,289,393 + ABZR87_RS21890 0.81 +1.6
1,289,393 + ABZR87_RS21890 0.81 +0.4
1,289,393 + ABZR87_RS21890 0.81 +0.2
1,289,394 - ABZR87_RS21890 0.81 -1.0
1,289,394 - ABZR87_RS21890 0.81 +1.0
1,289,394 - ABZR87_RS21890 0.81 +0.9
1,289,530 + -0.4
1,289,530 + -1.0
1,289,531 - +1.9
1,289,531 - -1.0
1,289,531 - -0.9
1,289,531 - +0.6
1,289,550 + ABZR87_RS21895 0.11 -1.0
1,289,550 + ABZR87_RS21895 0.11 -0.4
1,289,550 + ABZR87_RS21895 0.11 +0.3
1,289,550 + ABZR87_RS21895 0.11 +0.3
1,289,550 + ABZR87_RS21895 0.11 -1.9
1,289,551 - ABZR87_RS21895 0.11 +0.1
1,289,551 - ABZR87_RS21895 0.11 -1.3
1,289,551 - ABZR87_RS21895 0.11 -0.5
1,289,554 - ABZR87_RS21895 0.11 -0.1
1,289,554 - ABZR87_RS21895 0.11 -0.6
1,289,679 + ABZR87_RS21895 0.26 +0.6
1,289,679 + ABZR87_RS21895 0.26 +0.0
1,289,680 - ABZR87_RS21895 0.26 +0.3
1,289,680 - ABZR87_RS21895 0.26 -0.3
1,289,691 + ABZR87_RS21895 0.27 +0.1
1,289,691 + ABZR87_RS21895 0.27 -0.3
1,289,692 - ABZR87_RS21895 0.27 +1.1
1,290,082 + ABZR87_RS21895 0.72 +2.0
1,290,083 - ABZR87_RS21895 0.72 +0.3
1,290,206 + ABZR87_RS21895 0.87 -1.4
1,290,206 + ABZR87_RS21895 0.87 -0.1
1,290,206 + ABZR87_RS21895 0.87 +0.4
1,290,207 - ABZR87_RS21895 0.87 +0.2
1,290,207 - ABZR87_RS21895 0.87 -0.7
1,290,217 + ABZR87_RS21895 0.88 +0.4
1,290,218 - ABZR87_RS21895 0.88 -0.8
1,290,218 - ABZR87_RS21895 0.88 -0.1
1,290,218 - ABZR87_RS21895 0.88 +0.2
1,290,218 - ABZR87_RS21895 0.88 -0.0
1,290,218 - ABZR87_RS21895 0.88 -0.0
1,290,302 - -0.4
1,290,302 - +0.2
1,290,302 - +0.2
1,290,355 + +0.2
1,290,355 + +0.1
1,290,583 + ABZR87_RS21900 0.25 +0.3
1,290,583 + ABZR87_RS21900 0.25 +0.1
1,290,584 - ABZR87_RS21900 0.26 -0.5
1,290,584 - ABZR87_RS21900 0.26 +0.6
1,290,584 - ABZR87_RS21900 0.26 -0.3
1,290,584 - ABZR87_RS21900 0.26 +0.3
1,290,584 - ABZR87_RS21900 0.26 -0.1
1,290,584 - ABZR87_RS21900 0.26 -0.2
1,290,585 + ABZR87_RS21900 0.26 -0.6
1,290,586 - ABZR87_RS21900 0.26 +1.2
1,290,586 - ABZR87_RS21900 0.26 +1.5
1,290,586 - ABZR87_RS21900 0.26 +0.1
1,290,661 + ABZR87_RS21900 0.38 +0.5
1,290,662 - ABZR87_RS21900 0.38 -0.8
1,290,829 + ABZR87_RS21900 0.65 +0.5
1,290,829 + ABZR87_RS21900 0.65 -0.8
1,290,829 + ABZR87_RS21900 0.65 -1.2
1,290,829 + ABZR87_RS21900 0.65 -0.2
1,290,829 + ABZR87_RS21900 0.65 +0.8
1,290,830 - ABZR87_RS21900 0.65 -0.9
1,290,830 - ABZR87_RS21900 0.65 +1.7
1,290,830 - ABZR87_RS21900 0.65 -0.1
1,290,830 - ABZR87_RS21900 0.65 -0.9
1,290,830 - ABZR87_RS21900 0.65 -0.2
1,290,830 - ABZR87_RS21900 0.65 -0.4
1,290,830 - ABZR87_RS21900 0.65 +0.8
1,291,116 - -0.3
1,291,286 - +0.6
1,291,286 - -0.1
1,291,286 - +1.4
1,291,286 - -0.5

Or see this region's nucleotide sequence