Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21475

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21465 and ABZR87_RS21470 are separated by 107 nucleotidesABZR87_RS21470 and ABZR87_RS21475 overlap by 4 nucleotidesABZR87_RS21475 and ABZR87_RS21480 overlap by 4 nucleotides ABZR87_RS21465: ABZR87_RS21465 - M1 family metallopeptidase, at 1,195,962 to 1,198,202 _RS21465 ABZR87_RS21470: ABZR87_RS21470 - P-II family nitrogen regulator, at 1,198,310 to 1,198,633 _RS21470 ABZR87_RS21475: ABZR87_RS21475 - efflux RND transporter permease subunit, at 1,198,630 to 1,201,779 _RS21475 ABZR87_RS21480: ABZR87_RS21480 - efflux RND transporter periplasmic adaptor subunit, at 1,201,776 to 1,202,996 _RS21480 Position (kb) 1198 1199 1200 1201 1202Strain fitness (log2 ratio) -2 -1 0 1at 1197.727 kb on - strand, within ABZR87_RS21465at 1197.765 kb on + strand, within ABZR87_RS21465at 1197.873 kb on + strand, within ABZR87_RS21465at 1197.874 kb on - strand, within ABZR87_RS21465at 1197.874 kb on - strand, within ABZR87_RS21465at 1197.876 kb on + strand, within ABZR87_RS21465at 1197.876 kb on + strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.888 kb on + strand, within ABZR87_RS21465at 1197.889 kb on - strand, within ABZR87_RS21465at 1197.889 kb on - strand, within ABZR87_RS21465at 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.987 kb on - strandat 1198.201 kb on - strandat 1198.525 kb on - strand, within ABZR87_RS21470at 1198.525 kb on - strand, within ABZR87_RS21470at 1198.614 kb on - strandat 1198.661 kb on + strandat 1198.661 kb on + strandat 1198.661 kb on + strandat 1198.933 kb on + strandat 1198.933 kb on + strandat 1198.934 kb on - strandat 1198.934 kb on - strandat 1198.971 kb on - strand, within ABZR87_RS21475at 1198.971 kb on - strand, within ABZR87_RS21475at 1199.168 kb on + strand, within ABZR87_RS21475at 1199.168 kb on + strand, within ABZR87_RS21475at 1199.169 kb on - strand, within ABZR87_RS21475at 1199.171 kb on + strand, within ABZR87_RS21475at 1199.172 kb on - strand, within ABZR87_RS21475at 1199.767 kb on + strand, within ABZR87_RS21475at 1200.161 kb on + strand, within ABZR87_RS21475at 1200.272 kb on + strand, within ABZR87_RS21475at 1200.272 kb on + strand, within ABZR87_RS21475at 1200.679 kb on + strand, within ABZR87_RS21475at 1200.679 kb on + strand, within ABZR87_RS21475at 1200.680 kb on - strand, within ABZR87_RS21475at 1200.680 kb on - strand, within ABZR87_RS21475at 1200.785 kb on + strand, within ABZR87_RS21475at 1200.786 kb on - strand, within ABZR87_RS21475at 1200.786 kb on - strand, within ABZR87_RS21475at 1200.788 kb on + strand, within ABZR87_RS21475at 1200.788 kb on + strand, within ABZR87_RS21475at 1200.789 kb on - strand, within ABZR87_RS21475at 1201.076 kb on + strand, within ABZR87_RS21475at 1201.077 kb on - strand, within ABZR87_RS21475at 1201.077 kb on - strand, within ABZR87_RS21475at 1201.202 kb on + strand, within ABZR87_RS21475at 1201.202 kb on + strand, within ABZR87_RS21475at 1201.355 kb on + strand, within ABZR87_RS21475at 1201.355 kb on + strand, within ABZR87_RS21475at 1201.356 kb on - strand, within ABZR87_RS21475at 1201.361 kb on + strand, within ABZR87_RS21475at 1201.362 kb on - strand, within ABZR87_RS21475at 1201.362 kb on - strand, within ABZR87_RS21475at 1201.469 kb on + strandat 1201.470 kb on - strandat 1201.921 kb on + strand, within ABZR87_RS21480at 1201.921 kb on + strand, within ABZR87_RS21480at 1201.921 kb on + strand, within ABZR87_RS21480at 1201.922 kb on - strand, within ABZR87_RS21480at 1201.922 kb on - strand, within ABZR87_RS21480at 1202.766 kb on + strand, within ABZR87_RS21480

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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1,197,727 - ABZR87_RS21465 0.79 -0.1
1,197,765 + ABZR87_RS21465 0.80 +0.3
1,197,873 + ABZR87_RS21465 0.85 -0.3
1,197,874 - ABZR87_RS21465 0.85 +1.0
1,197,874 - ABZR87_RS21465 0.85 -0.0
1,197,876 + ABZR87_RS21465 0.85 +0.7
1,197,876 + ABZR87_RS21465 0.85 +0.6
1,197,877 - ABZR87_RS21465 0.85 -0.9
1,197,877 - ABZR87_RS21465 0.85 +0.6
1,197,877 - ABZR87_RS21465 0.85 -0.5
1,197,888 + ABZR87_RS21465 0.86 +1.1
1,197,889 - ABZR87_RS21465 0.86 +0.8
1,197,889 - ABZR87_RS21465 0.86 +0.1
1,197,984 + +0.6
1,197,984 + -2.5
1,197,984 + +0.1
1,197,984 + +0.9
1,197,985 - -1.9
1,197,985 - +0.8
1,197,985 - +0.4
1,197,985 - -0.4
1,197,987 - +0.2
1,198,201 - -0.1
1,198,525 - ABZR87_RS21470 0.66 +0.5
1,198,525 - ABZR87_RS21470 0.66 -2.7
1,198,614 - -1.2
1,198,661 + -1.6
1,198,661 + +0.8
1,198,661 + -1.6
1,198,933 + +0.0
1,198,933 + +0.1
1,198,934 - +0.4
1,198,934 - -0.5
1,198,971 - ABZR87_RS21475 0.11 -0.4
1,198,971 - ABZR87_RS21475 0.11 +0.1
1,199,168 + ABZR87_RS21475 0.17 -0.5
1,199,168 + ABZR87_RS21475 0.17 +0.1
1,199,169 - ABZR87_RS21475 0.17 -0.2
1,199,171 + ABZR87_RS21475 0.17 -0.8
1,199,172 - ABZR87_RS21475 0.17 -0.4
1,199,767 + ABZR87_RS21475 0.36 +0.6
1,200,161 + ABZR87_RS21475 0.49 -0.6
1,200,272 + ABZR87_RS21475 0.52 -0.4
1,200,272 + ABZR87_RS21475 0.52 -0.4
1,200,679 + ABZR87_RS21475 0.65 +0.1
1,200,679 + ABZR87_RS21475 0.65 -1.8
1,200,680 - ABZR87_RS21475 0.65 +0.4
1,200,680 - ABZR87_RS21475 0.65 +0.1
1,200,785 + ABZR87_RS21475 0.68 +0.2
1,200,786 - ABZR87_RS21475 0.68 -1.8
1,200,786 - ABZR87_RS21475 0.68 -0.6
1,200,788 + ABZR87_RS21475 0.69 -0.0
1,200,788 + ABZR87_RS21475 0.69 -0.1
1,200,789 - ABZR87_RS21475 0.69 +0.9
1,201,076 + ABZR87_RS21475 0.78 -0.4
1,201,077 - ABZR87_RS21475 0.78 -0.3
1,201,077 - ABZR87_RS21475 0.78 -0.2
1,201,202 + ABZR87_RS21475 0.82 -0.8
1,201,202 + ABZR87_RS21475 0.82 -1.6
1,201,355 + ABZR87_RS21475 0.87 -0.1
1,201,355 + ABZR87_RS21475 0.87 +0.0
1,201,356 - ABZR87_RS21475 0.87 -0.2
1,201,361 + ABZR87_RS21475 0.87 -1.6
1,201,362 - ABZR87_RS21475 0.87 +0.5
1,201,362 - ABZR87_RS21475 0.87 +0.0
1,201,469 + +0.4
1,201,470 - -0.5
1,201,921 + ABZR87_RS21480 0.12 +0.6
1,201,921 + ABZR87_RS21480 0.12 -0.8
1,201,921 + ABZR87_RS21480 0.12 -1.2
1,201,922 - ABZR87_RS21480 0.12 -1.2
1,201,922 - ABZR87_RS21480 0.12 -0.4
1,202,766 + ABZR87_RS21480 0.81 +0.9

Or see this region's nucleotide sequence