Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20175

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20170 and ABZR87_RS20175 are separated by 38 nucleotidesABZR87_RS20175 and ABZR87_RS20180 are separated by 170 nucleotidesABZR87_RS20180 and ABZR87_RS20185 are separated by 40 nucleotides ABZR87_RS20170: ABZR87_RS20170 - type VI secretion system protein TssA, at 909,078 to 910,154 _RS20170 ABZR87_RS20175: ABZR87_RS20175 - hypothetical protein, at 910,193 to 910,600 _RS20175 ABZR87_RS20180: ABZR87_RS20180 - DUF6708 domain-containing protein, at 910,771 to 911,268 _RS20180 ABZR87_RS20185: ABZR87_RS20185 - hypothetical protein, at 911,309 to 911,731 _RS20185 Position (kb) 910 911Strain fitness (log2 ratio) -2 -1 0 1 2at 909.217 kb on + strand, within ABZR87_RS20170at 909.217 kb on + strand, within ABZR87_RS20170at 909.218 kb on - strand, within ABZR87_RS20170at 909.218 kb on - strand, within ABZR87_RS20170at 909.218 kb on - strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.700 kb on + strand, within ABZR87_RS20170at 909.720 kb on + strand, within ABZR87_RS20170at 909.720 kb on + strand, within ABZR87_RS20170at 909.720 kb on + strand, within ABZR87_RS20170at 909.721 kb on - strand, within ABZR87_RS20170at 909.721 kb on - strand, within ABZR87_RS20170at 909.818 kb on - strand, within ABZR87_RS20170at 910.287 kb on + strand, within ABZR87_RS20175at 910.287 kb on + strand, within ABZR87_RS20175at 910.288 kb on - strand, within ABZR87_RS20175at 910.449 kb on + strand, within ABZR87_RS20175at 910.449 kb on + strand, within ABZR87_RS20175at 910.450 kb on - strand, within ABZR87_RS20175at 910.450 kb on - strand, within ABZR87_RS20175at 910.450 kb on - strand, within ABZR87_RS20175at 910.483 kb on - strand, within ABZR87_RS20175at 910.504 kb on - strand, within ABZR87_RS20175at 910.600 kb on + strandat 910.601 kb on - strandat 910.601 kb on - strandat 910.654 kb on + strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.688 kb on + strandat 910.850 kb on + strand, within ABZR87_RS20180at 910.861 kb on - strand, within ABZR87_RS20180at 910.932 kb on + strand, within ABZR87_RS20180at 910.932 kb on + strand, within ABZR87_RS20180at 910.933 kb on - strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.980 kb on - strand, within ABZR87_RS20180at 911.011 kb on - strand, within ABZR87_RS20180at 911.073 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.151 kb on + strand, within ABZR87_RS20180at 911.151 kb on + strand, within ABZR87_RS20180at 911.183 kb on + strand, within ABZR87_RS20180at 911.183 kb on + strand, within ABZR87_RS20180at 911.184 kb on - strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.195 kb on + strand, within ABZR87_RS20180at 911.196 kb on - strand, within ABZR87_RS20180at 911.196 kb on - strand, within ABZR87_RS20180at 911.196 kb on - strand, within ABZR87_RS20180at 911.210 kb on + strand, within ABZR87_RS20180at 911.211 kb on - strand, within ABZR87_RS20180at 911.211 kb on - strand, within ABZR87_RS20180at 911.211 kb on - strand, within ABZR87_RS20180at 911.306 kb on + strandat 911.306 kb on + strandat 911.306 kb on + strandat 911.306 kb on + strandat 911.306 kb on + strandat 911.307 kb on - strandat 911.307 kb on - strandat 911.307 kb on - strandat 911.307 kb on - strandat 911.472 kb on + strand, within ABZR87_RS20185at 911.472 kb on + strand, within ABZR87_RS20185at 911.472 kb on + strand, within ABZR87_RS20185at 911.473 kb on - strand, within ABZR87_RS20185at 911.473 kb on - strand, within ABZR87_RS20185at 911.473 kb on - strand, within ABZR87_RS20185at 911.473 kb on - strand, within ABZR87_RS20185at 911.473 kb on - strand, within ABZR87_RS20185at 911.579 kb on + strand, within ABZR87_RS20185at 911.579 kb on + strand, within ABZR87_RS20185at 911.579 kb on + strand, within ABZR87_RS20185at 911.579 kb on + strand, within ABZR87_RS20185at 911.579 kb on + strand, within ABZR87_RS20185at 911.580 kb on - strand, within ABZR87_RS20185at 911.580 kb on - strand, within ABZR87_RS20185at 911.580 kb on - strand, within ABZR87_RS20185at 911.580 kb on - strand, within ABZR87_RS20185at 911.580 kb on - strand, within ABZR87_RS20185at 911.595 kb on + strand, within ABZR87_RS20185at 911.596 kb on - strand, within ABZR87_RS20185

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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909,217 + ABZR87_RS20170 0.13 -0.3
909,217 + ABZR87_RS20170 0.13 +0.3
909,218 - ABZR87_RS20170 0.13 +1.2
909,218 - ABZR87_RS20170 0.13 +1.0
909,218 - ABZR87_RS20170 0.13 -0.5
909,559 + ABZR87_RS20170 0.45 +0.2
909,559 + ABZR87_RS20170 0.45 -0.8
909,559 + ABZR87_RS20170 0.45 -0.7
909,559 + ABZR87_RS20170 0.45 +0.3
909,700 + ABZR87_RS20170 0.58 -0.6
909,720 + ABZR87_RS20170 0.60 -1.1
909,720 + ABZR87_RS20170 0.60 -1.3
909,720 + ABZR87_RS20170 0.60 -0.9
909,721 - ABZR87_RS20170 0.60 +0.8
909,721 - ABZR87_RS20170 0.60 -1.1
909,818 - ABZR87_RS20170 0.69 -1.5
910,287 + ABZR87_RS20175 0.23 -1.4
910,287 + ABZR87_RS20175 0.23 -0.6
910,288 - ABZR87_RS20175 0.23 +0.3
910,449 + ABZR87_RS20175 0.63 +0.5
910,449 + ABZR87_RS20175 0.63 +0.2
910,450 - ABZR87_RS20175 0.63 -0.8
910,450 - ABZR87_RS20175 0.63 -1.9
910,450 - ABZR87_RS20175 0.63 -0.8
910,483 - ABZR87_RS20175 0.71 +1.0
910,504 - ABZR87_RS20175 0.76 -0.9
910,600 + -0.0
910,601 - +0.7
910,601 - +0.2
910,654 + -1.0
910,655 - -0.0
910,655 - +1.9
910,655 - +1.0
910,655 - +0.2
910,655 - -0.1
910,688 + -0.5
910,850 + ABZR87_RS20180 0.16 +0.1
910,861 - ABZR87_RS20180 0.18 -0.3
910,932 + ABZR87_RS20180 0.32 -1.3
910,932 + ABZR87_RS20180 0.32 -0.1
910,933 - ABZR87_RS20180 0.33 +0.8
910,979 + ABZR87_RS20180 0.42 +0.6
910,979 + ABZR87_RS20180 0.42 -0.0
910,979 + ABZR87_RS20180 0.42 -0.7
910,979 + ABZR87_RS20180 0.42 -0.2
910,980 - ABZR87_RS20180 0.42 +0.5
911,011 - ABZR87_RS20180 0.48 -0.6
911,073 + ABZR87_RS20180 0.61 +0.6
911,075 + ABZR87_RS20180 0.61 +0.2
911,075 + ABZR87_RS20180 0.61 -0.6
911,075 + ABZR87_RS20180 0.61 +0.3
911,075 + ABZR87_RS20180 0.61 -1.2
911,076 - ABZR87_RS20180 0.61 +1.3
911,076 - ABZR87_RS20180 0.61 -1.2
911,076 - ABZR87_RS20180 0.61 +0.2
911,076 - ABZR87_RS20180 0.61 -0.1
911,076 - ABZR87_RS20180 0.61 +0.1
911,076 - ABZR87_RS20180 0.61 -0.1
911,076 - ABZR87_RS20180 0.61 -0.9
911,076 - ABZR87_RS20180 0.61 +0.2
911,151 + ABZR87_RS20180 0.76 -0.3
911,151 + ABZR87_RS20180 0.76 -1.9
911,183 + ABZR87_RS20180 0.83 -0.2
911,183 + ABZR87_RS20180 0.83 +0.4
911,184 - ABZR87_RS20180 0.83 +0.3
911,195 + ABZR87_RS20180 0.85 +0.0
911,195 + ABZR87_RS20180 0.85 -1.1
911,195 + ABZR87_RS20180 0.85 +0.2
911,195 + ABZR87_RS20180 0.85 +0.1
911,195 + ABZR87_RS20180 0.85 -0.8
911,195 + ABZR87_RS20180 0.85 +0.3
911,195 + ABZR87_RS20180 0.85 -0.1
911,195 + ABZR87_RS20180 0.85 +0.4
911,195 + ABZR87_RS20180 0.85 -0.7
911,195 + ABZR87_RS20180 0.85 -0.1
911,196 - ABZR87_RS20180 0.85 -0.9
911,196 - ABZR87_RS20180 0.85 +0.2
911,196 - ABZR87_RS20180 0.85 +1.2
911,210 + ABZR87_RS20180 0.88 +0.6
911,211 - ABZR87_RS20180 0.88 +1.2
911,211 - ABZR87_RS20180 0.88 -0.8
911,211 - ABZR87_RS20180 0.88 -2.0
911,306 + -0.0
911,306 + -1.0
911,306 + -1.5
911,306 + +0.4
911,306 + -0.2
911,307 - +0.6
911,307 - -0.4
911,307 - -0.8
911,307 - +0.0
911,472 + ABZR87_RS20185 0.39 -0.2
911,472 + ABZR87_RS20185 0.39 +0.0
911,472 + ABZR87_RS20185 0.39 -0.2
911,473 - ABZR87_RS20185 0.39 -1.2
911,473 - ABZR87_RS20185 0.39 +0.1
911,473 - ABZR87_RS20185 0.39 -0.1
911,473 - ABZR87_RS20185 0.39 +0.1
911,473 - ABZR87_RS20185 0.39 +0.2
911,579 + ABZR87_RS20185 0.64 +0.0
911,579 + ABZR87_RS20185 0.64 +0.3
911,579 + ABZR87_RS20185 0.64 -0.6
911,579 + ABZR87_RS20185 0.64 -0.9
911,579 + ABZR87_RS20185 0.64 -1.1
911,580 - ABZR87_RS20185 0.64 -0.4
911,580 - ABZR87_RS20185 0.64 -0.1
911,580 - ABZR87_RS20185 0.64 -0.2
911,580 - ABZR87_RS20185 0.64 -0.3
911,580 - ABZR87_RS20185 0.64 +1.0
911,595 + ABZR87_RS20185 0.68 -0.0
911,596 - ABZR87_RS20185 0.68 -0.5

Or see this region's nucleotide sequence