Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20155 and ABZR87_RS20160 are separated by 2 nucleotides ABZR87_RS20160 and ABZR87_RS20165 are separated by 92 nucleotides ABZR87_RS20165 and ABZR87_RS20170 are separated by 5 nucleotides
ABZR87_RS20155: ABZR87_RS20155 - type VI secretion system-associated protein TagF, at 905,721 to 906,716
_RS20155
ABZR87_RS20160: ABZR87_RS20160 - OmpA family protein, at 906,719 to 907,537
_RS20160
ABZR87_RS20165: ABZR87_RS20165 - TIGR04222 domain-containing membrane protein, at 907,630 to 909,072
_RS20165
ABZR87_RS20170: ABZR87_RS20170 - type VI secretion system protein TssA, at 909,078 to 910,154
_RS20170
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -1
0
1
2 at 906.645 kb on + strand at 906.686 kb on + strand at 906.788 kb on + strand at 906.788 kb on + strand at 906.789 kb on - strand at 906.789 kb on - strand at 906.921 kb on - strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.403 kb on + strand, within ABZR87_RS20160 at 907.403 kb on + strand, within ABZR87_RS20160 at 907.404 kb on - strand, within ABZR87_RS20160 at 907.531 kb on + strand at 907.603 kb on + strand at 907.603 kb on + strand at 907.603 kb on + strand at 907.676 kb on + strand at 907.677 kb on - strand at 907.677 kb on - strand at 907.677 kb on - strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.679 kb on - strand at 907.679 kb on - strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.702 kb on + strand at 907.702 kb on + strand at 907.702 kb on + strand at 907.703 kb on - strand at 907.703 kb on - strand at 907.703 kb on - strand at 907.717 kb on + strand at 907.804 kb on + strand, within ABZR87_RS20165 at 907.805 kb on - strand, within ABZR87_RS20165 at 907.805 kb on - strand, within ABZR87_RS20165 at 907.888 kb on + strand, within ABZR87_RS20165 at 907.921 kb on + strand, within ABZR87_RS20165 at 907.921 kb on + strand, within ABZR87_RS20165 at 908.081 kb on + strand, within ABZR87_RS20165 at 908.082 kb on - strand, within ABZR87_RS20165 at 908.082 kb on - strand, within ABZR87_RS20165 at 908.152 kb on + strand, within ABZR87_RS20165 at 908.153 kb on - strand, within ABZR87_RS20165 at 908.153 kb on - strand, within ABZR87_RS20165 at 908.179 kb on + strand, within ABZR87_RS20165 at 908.179 kb on + strand, within ABZR87_RS20165 at 908.180 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.731 kb on + strand, within ABZR87_RS20165 at 908.732 kb on - strand, within ABZR87_RS20165 at 908.732 kb on - strand, within ABZR87_RS20165 at 908.809 kb on + strand, within ABZR87_RS20165 at 909.031 kb on - strand at 909.031 kb on - strand at 909.071 kb on - strand at 909.217 kb on + strand, within ABZR87_RS20170 at 909.217 kb on + strand, within ABZR87_RS20170 at 909.218 kb on - strand, within ABZR87_RS20170 at 909.218 kb on - strand, within ABZR87_RS20170 at 909.218 kb on - strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.700 kb on + strand, within ABZR87_RS20170 at 909.720 kb on + strand, within ABZR87_RS20170 at 909.720 kb on + strand, within ABZR87_RS20170 at 909.720 kb on + strand, within ABZR87_RS20170 at 909.721 kb on - strand, within ABZR87_RS20170 at 909.721 kb on - strand, within ABZR87_RS20170 at 909.818 kb on - strand, within ABZR87_RS20170
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 906,645 + -0.3 906,686 + +0.0 906,788 + -0.6 906,788 + -1.4 906,789 - -0.5 906,789 - +0.0 906,921 - ABZR87_RS20160 0.25 -0.0 907,142 + ABZR87_RS20160 0.52 +0.3 907,142 + ABZR87_RS20160 0.52 -0.1 907,142 + ABZR87_RS20160 0.52 +0.2 907,142 + ABZR87_RS20160 0.52 +1.4 907,142 + ABZR87_RS20160 0.52 +0.8 907,403 + ABZR87_RS20160 0.84 -1.4 907,403 + ABZR87_RS20160 0.84 -0.6 907,404 - ABZR87_RS20160 0.84 +1.3 907,531 + +1.2 907,603 + -0.2 907,603 + +0.7 907,603 + -0.5 907,676 + +0.3 907,677 - -0.2 907,677 - -0.0 907,677 - +0.5 907,678 + +0.4 907,678 + +0.6 907,678 + -0.2 907,678 + -1.1 907,679 - +0.7 907,679 - +0.9 907,680 + +0.0 907,680 + +1.1 907,680 + -0.9 907,680 + -0.8 907,680 + -0.0 907,680 + +0.4 907,680 + +0.8 907,680 + +0.3 907,681 - -0.1 907,681 - +0.4 907,681 - -1.2 907,681 - +0.7 907,681 - +0.4 907,681 - -0.7 907,702 + +0.7 907,702 + +0.6 907,702 + +0.3 907,703 - -0.0 907,703 - +0.7 907,703 - -1.0 907,717 + -1.0 907,804 + ABZR87_RS20165 0.12 -0.3 907,805 - ABZR87_RS20165 0.12 +0.1 907,805 - ABZR87_RS20165 0.12 -0.0 907,888 + ABZR87_RS20165 0.18 +0.0 907,921 + ABZR87_RS20165 0.20 -0.4 907,921 + ABZR87_RS20165 0.20 +1.2 908,081 + ABZR87_RS20165 0.31 -0.1 908,082 - ABZR87_RS20165 0.31 -0.5 908,082 - ABZR87_RS20165 0.31 +0.6 908,152 + ABZR87_RS20165 0.36 +0.1 908,153 - ABZR87_RS20165 0.36 -0.5 908,153 - ABZR87_RS20165 0.36 +0.4 908,179 + ABZR87_RS20165 0.38 -0.2 908,179 + ABZR87_RS20165 0.38 +0.8 908,180 - ABZR87_RS20165 0.38 +1.1 908,237 - ABZR87_RS20165 0.42 +1.0 908,237 - ABZR87_RS20165 0.42 +0.4 908,237 - ABZR87_RS20165 0.42 +1.9 908,237 - ABZR87_RS20165 0.42 -0.0 908,416 + ABZR87_RS20165 0.54 -0.7 908,416 + ABZR87_RS20165 0.54 -0.8 908,416 + ABZR87_RS20165 0.54 -1.4 908,416 + ABZR87_RS20165 0.54 -0.1 908,416 + ABZR87_RS20165 0.54 -0.8 908,416 + ABZR87_RS20165 0.54 +0.6 908,417 - ABZR87_RS20165 0.55 +0.2 908,417 - ABZR87_RS20165 0.55 +0.4 908,417 - ABZR87_RS20165 0.55 +0.2 908,417 - ABZR87_RS20165 0.55 -0.3 908,417 - ABZR87_RS20165 0.55 +0.5 908,417 - ABZR87_RS20165 0.55 -0.9 908,417 - ABZR87_RS20165 0.55 +0.2 908,417 - ABZR87_RS20165 0.55 +0.4 908,731 + ABZR87_RS20165 0.76 +0.6 908,732 - ABZR87_RS20165 0.76 -0.1 908,732 - ABZR87_RS20165 0.76 +0.5 908,809 + ABZR87_RS20165 0.82 -1.4 909,031 - -0.3 909,031 - -0.1 909,071 - +0.1 909,217 + ABZR87_RS20170 0.13 -0.3 909,217 + ABZR87_RS20170 0.13 +0.3 909,218 - ABZR87_RS20170 0.13 +1.2 909,218 - ABZR87_RS20170 0.13 +1.0 909,218 - ABZR87_RS20170 0.13 -0.5 909,559 + ABZR87_RS20170 0.45 +0.2 909,559 + ABZR87_RS20170 0.45 -0.8 909,559 + ABZR87_RS20170 0.45 -0.7 909,559 + ABZR87_RS20170 0.45 +0.3 909,700 + ABZR87_RS20170 0.58 -0.6 909,720 + ABZR87_RS20170 0.60 -1.1 909,720 + ABZR87_RS20170 0.60 -1.3 909,720 + ABZR87_RS20170 0.60 -0.9 909,721 - ABZR87_RS20170 0.60 +0.8 909,721 - ABZR87_RS20170 0.60 -1.1 909,818 - ABZR87_RS20170 0.69 -1.5
Or see this region's nucleotide sequence