Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20005

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20000 and ABZR87_RS20005 are separated by 37 nucleotidesABZR87_RS20005 and ABZR87_RS20010 are separated by 25 nucleotidesABZR87_RS20010 and ABZR87_RS20015 are separated by 4 nucleotides ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247 _RS20000 ABZR87_RS20005: ABZR87_RS20005 - hypothetical protein, at 866,285 to 866,926 _RS20005 ABZR87_RS20010: ABZR87_RS20010 - DeoR family transcriptional regulator, at 866,952 to 867,635 _RS20010 ABZR87_RS20015: ABZR87_RS20015 - phosphoribosyltransferase family protein, at 867,640 to 868,290 _RS20015 Position (kb) 866 867Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 865.289 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.471 kb on + strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.472 kb on - strand, within ABZR87_RS20000at 865.496 kb on - strand, within ABZR87_RS20000at 865.529 kb on - strand, within ABZR87_RS20000at 865.546 kb on + strand, within ABZR87_RS20000at 865.546 kb on + strand, within ABZR87_RS20000at 865.547 kb on - strand, within ABZR87_RS20000at 865.594 kb on + strand, within ABZR87_RS20000at 865.595 kb on - strand, within ABZR87_RS20000at 865.595 kb on - strand, within ABZR87_RS20000at 865.595 kb on - strand, within ABZR87_RS20000at 865.883 kb on - strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.905 kb on + strand, within ABZR87_RS20000at 865.906 kb on - strand, within ABZR87_RS20000at 865.906 kb on - strand, within ABZR87_RS20000at 865.906 kb on - strand, within ABZR87_RS20000at 865.909 kb on + strand, within ABZR87_RS20000at 865.909 kb on + strand, within ABZR87_RS20000at 865.910 kb on - strand, within ABZR87_RS20000at 865.910 kb on - strand, within ABZR87_RS20000at 866.040 kb on - strand, within ABZR87_RS20000at 866.146 kb on - strandat 866.245 kb on + strandat 866.245 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.341 kb on + strandat 866.341 kb on + strandat 866.341 kb on + strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.351 kb on + strand, within ABZR87_RS20005at 866.351 kb on + strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.369 kb on - strand, within ABZR87_RS20005at 866.455 kb on + strand, within ABZR87_RS20005at 866.455 kb on + strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.628 kb on + strand, within ABZR87_RS20005at 866.629 kb on - strand, within ABZR87_RS20005at 866.705 kb on - strand, within ABZR87_RS20005at 866.726 kb on + strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.938 kb on - strandat 866.938 kb on - strandat 867.099 kb on + strand, within ABZR87_RS20010at 867.100 kb on - strand, within ABZR87_RS20010at 867.100 kb on - strand, within ABZR87_RS20010at 867.221 kb on + strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.276 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.340 kb on - strand, within ABZR87_RS20010at 867.633 kb on + strandat 867.633 kb on + strandat 867.698 kb on - strandat 867.698 kb on - strandat 867.868 kb on + strand, within ABZR87_RS20015at 867.869 kb on - strand, within ABZR87_RS20015at 867.869 kb on - strand, within ABZR87_RS20015at 867.880 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.910 kb on + strand, within ABZR87_RS20015at 867.910 kb on + strand, within ABZR87_RS20015at 867.910 kb on + strand, within ABZR87_RS20015at 867.911 kb on - strand, within ABZR87_RS20015

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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865,289 + ABZR87_RS20000 0.38 +2.3
865,471 + ABZR87_RS20000 0.50 -1.1
865,471 + ABZR87_RS20000 0.50 -0.0
865,471 + ABZR87_RS20000 0.50 +0.6
865,471 + ABZR87_RS20000 0.50 +1.3
865,471 + ABZR87_RS20000 0.50 -1.5
865,471 + ABZR87_RS20000 0.50 +0.0
865,471 + ABZR87_RS20000 0.50 +0.3
865,471 + ABZR87_RS20000 0.50 +0.3
865,471 + ABZR87_RS20000 0.50 +1.3
865,471 + ABZR87_RS20000 0.50 -0.0
865,472 - ABZR87_RS20000 0.50 +0.3
865,472 - ABZR87_RS20000 0.50 +0.0
865,472 - ABZR87_RS20000 0.50 -0.2
865,472 - ABZR87_RS20000 0.50 +0.0
865,496 - ABZR87_RS20000 0.51 -0.1
865,529 - ABZR87_RS20000 0.54 -0.2
865,546 + ABZR87_RS20000 0.55 -0.1
865,546 + ABZR87_RS20000 0.55 +0.1
865,547 - ABZR87_RS20000 0.55 -0.0
865,594 + ABZR87_RS20000 0.58 +0.0
865,595 - ABZR87_RS20000 0.58 +1.0
865,595 - ABZR87_RS20000 0.58 +1.2
865,595 - ABZR87_RS20000 0.58 -0.5
865,883 - ABZR87_RS20000 0.76 +0.1
865,905 + ABZR87_RS20000 0.78 +0.3
865,905 + ABZR87_RS20000 0.78 +0.1
865,905 + ABZR87_RS20000 0.78 -0.7
865,905 + ABZR87_RS20000 0.78 +0.5
865,905 + ABZR87_RS20000 0.78 -1.7
865,906 - ABZR87_RS20000 0.78 +0.3
865,906 - ABZR87_RS20000 0.78 +0.7
865,906 - ABZR87_RS20000 0.78 +0.2
865,909 + ABZR87_RS20000 0.78 +0.5
865,909 + ABZR87_RS20000 0.78 +0.2
865,910 - ABZR87_RS20000 0.78 -0.3
865,910 - ABZR87_RS20000 0.78 -0.0
866,040 - ABZR87_RS20000 0.87 +0.4
866,146 - -0.2
866,245 + +1.0
866,245 + +0.3
866,277 + +1.1
866,277 + +0.9
866,277 + +0.5
866,277 + +0.1
866,277 + -0.2
866,277 + -0.2
866,277 + -0.0
866,277 + -0.5
866,277 + +0.1
866,278 - +0.1
866,278 - -0.7
866,278 - -0.4
866,278 - +0.3
866,278 - +0.1
866,341 + +0.8
866,341 + +0.8
866,341 + -1.5
866,342 - +0.1
866,342 - +0.2
866,342 - +3.9
866,342 - +0.8
866,351 + ABZR87_RS20005 0.10 -0.8
866,351 + ABZR87_RS20005 0.10 -0.5
866,352 - ABZR87_RS20005 0.10 -0.2
866,352 - ABZR87_RS20005 0.10 -0.4
866,352 - ABZR87_RS20005 0.10 +0.2
866,368 + ABZR87_RS20005 0.13 -0.5
866,368 + ABZR87_RS20005 0.13 -0.5
866,368 + ABZR87_RS20005 0.13 -2.3
866,369 - ABZR87_RS20005 0.13 +1.2
866,455 + ABZR87_RS20005 0.26 +0.4
866,455 + ABZR87_RS20005 0.26 -0.5
866,456 - ABZR87_RS20005 0.27 +1.2
866,456 - ABZR87_RS20005 0.27 +0.2
866,456 - ABZR87_RS20005 0.27 -0.0
866,628 + ABZR87_RS20005 0.53 +0.2
866,629 - ABZR87_RS20005 0.54 -0.0
866,705 - ABZR87_RS20005 0.65 +0.0
866,726 + ABZR87_RS20005 0.69 -0.2
866,727 - ABZR87_RS20005 0.69 -0.3
866,727 - ABZR87_RS20005 0.69 -1.3
866,727 - ABZR87_RS20005 0.69 -0.9
866,727 - ABZR87_RS20005 0.69 +0.1
866,727 - ABZR87_RS20005 0.69 +0.6
866,938 - +0.1
866,938 - -0.2
867,099 + ABZR87_RS20010 0.21 -0.5
867,100 - ABZR87_RS20010 0.22 +0.3
867,100 - ABZR87_RS20010 0.22 -1.0
867,221 + ABZR87_RS20010 0.39 -0.3
867,222 - ABZR87_RS20010 0.39 +0.4
867,222 - ABZR87_RS20010 0.39 -1.4
867,222 - ABZR87_RS20010 0.39 -0.3
867,222 - ABZR87_RS20010 0.39 +1.0
867,276 + ABZR87_RS20010 0.47 -0.4
867,339 + ABZR87_RS20010 0.57 -1.0
867,339 + ABZR87_RS20010 0.57 -0.8
867,339 + ABZR87_RS20010 0.57 -1.0
867,339 + ABZR87_RS20010 0.57 -0.3
867,340 - ABZR87_RS20010 0.57 -0.2
867,633 + +0.5
867,633 + -0.5
867,698 - -0.0
867,698 - -0.8
867,868 + ABZR87_RS20015 0.35 -0.3
867,869 - ABZR87_RS20015 0.35 -0.4
867,869 - ABZR87_RS20015 0.35 +0.6
867,880 + ABZR87_RS20015 0.37 +0.4
867,903 + ABZR87_RS20015 0.40 +0.3
867,903 + ABZR87_RS20015 0.40 -0.5
867,903 + ABZR87_RS20015 0.40 +1.3
867,903 + ABZR87_RS20015 0.40 -0.3
867,904 - ABZR87_RS20015 0.41 -1.2
867,904 - ABZR87_RS20015 0.41 -0.4
867,904 - ABZR87_RS20015 0.41 -1.1
867,904 - ABZR87_RS20015 0.41 +0.0
867,910 + ABZR87_RS20015 0.41 -0.5
867,910 + ABZR87_RS20015 0.41 +1.4
867,910 + ABZR87_RS20015 0.41 -1.8
867,911 - ABZR87_RS20015 0.42 +0.3

Or see this region's nucleotide sequence