Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19775 and ABZR87_RS19780 are separated by 140 nucleotides ABZR87_RS19780 and ABZR87_RS19785 are separated by 11 nucleotides ABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotides ABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotides
ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247
_RS19775
ABZR87_RS19780: ABZR87_RS19780 - Lrp/AsnC family transcriptional regulator, at 810,388 to 810,834
_RS19780
ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024
_RS19785
ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611
_RS19790
ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486
_RS19795
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 809.953 kb on - strand, within ABZR87_RS19775 at 809.953 kb on - strand, within ABZR87_RS19775 at 809.988 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.099 kb on - strand, within ABZR87_RS19775 at 810.199 kb on + strand at 810.199 kb on + strand at 810.199 kb on + strand at 810.199 kb on + strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.238 kb on + strand at 810.239 kb on - strand at 810.332 kb on + strand at 810.333 kb on - strand at 810.333 kb on - strand at 810.538 kb on + strand, within ABZR87_RS19780 at 810.538 kb on + strand, within ABZR87_RS19780 at 810.538 kb on + strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.571 kb on + strand, within ABZR87_RS19780 at 810.572 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.754 kb on + strand, within ABZR87_RS19780 at 810.754 kb on + strand, within ABZR87_RS19780 at 810.771 kb on + strand, within ABZR87_RS19780 at 810.847 kb on + strand at 810.962 kb on - strand at 810.962 kb on - strand at 810.962 kb on - strand at 810.992 kb on - strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.411 kb on + strand, within ABZR87_RS19785 at 811.411 kb on + strand, within ABZR87_RS19785 at 811.412 kb on - strand, within ABZR87_RS19785 at 811.412 kb on - strand, within ABZR87_RS19785 at 811.412 kb on - strand, within ABZR87_RS19785 at 811.465 kb on + strand, within ABZR87_RS19785 at 811.465 kb on + strand, within ABZR87_RS19785 at 811.466 kb on - strand, within ABZR87_RS19785 at 811.466 kb on - strand, within ABZR87_RS19785 at 811.466 kb on - strand, within ABZR87_RS19785 at 811.480 kb on + strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.481 kb on - strand, within ABZR87_RS19785 at 811.595 kb on + strand, within ABZR87_RS19785 at 811.596 kb on - strand, within ABZR87_RS19785 at 811.643 kb on - strand, within ABZR87_RS19785 at 811.756 kb on + strand, within ABZR87_RS19785 at 811.756 kb on - strand, within ABZR87_RS19785 at 811.793 kb on + strand, within ABZR87_RS19785 at 811.794 kb on - strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.876 kb on + strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 812.062 kb on - strand at 812.204 kb on + strand, within ABZR87_RS19790 at 812.204 kb on + strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.383 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.501 kb on + strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.649 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.666 kb on - strand at 812.711 kb on + strand at 812.712 kb on - strand at 812.740 kb on + strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.755 kb on + strand at 812.755 kb on + strand at 812.756 kb on - strand at 812.961 kb on - strand, within ABZR87_RS19795 at 812.961 kb on - strand, within ABZR87_RS19795 at 812.978 kb on + strand, within ABZR87_RS19795 at 812.979 kb on - strand, within ABZR87_RS19795
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 809,953 - ABZR87_RS19775 0.67 -0.5 809,953 - ABZR87_RS19775 0.67 -0.1 809,988 + ABZR87_RS19775 0.71 -0.1 810,098 + ABZR87_RS19775 0.83 +0.2 810,098 + ABZR87_RS19775 0.83 +0.5 810,098 + ABZR87_RS19775 0.83 -1.5 810,099 - ABZR87_RS19775 0.83 +0.5 810,199 + +0.3 810,199 + -1.2 810,199 + -0.3 810,199 + +0.5 810,200 - +2.0 810,200 - -0.4 810,200 - -1.5 810,200 - +0.4 810,200 - +0.4 810,200 - -0.7 810,200 - +0.6 810,238 + -0.2 810,239 - -0.5 810,332 + +2.3 810,333 - -0.0 810,333 - -0.0 810,538 + ABZR87_RS19780 0.34 -0.8 810,538 + ABZR87_RS19780 0.34 -0.1 810,538 + ABZR87_RS19780 0.34 -0.3 810,539 - ABZR87_RS19780 0.34 -0.5 810,539 - ABZR87_RS19780 0.34 -1.0 810,539 - ABZR87_RS19780 0.34 -0.4 810,539 - ABZR87_RS19780 0.34 -0.1 810,571 + ABZR87_RS19780 0.41 -0.3 810,572 - ABZR87_RS19780 0.41 +0.5 810,622 - ABZR87_RS19780 0.52 -1.6 810,622 - ABZR87_RS19780 0.52 +2.3 810,622 - ABZR87_RS19780 0.52 +0.4 810,706 + ABZR87_RS19780 0.71 -0.2 810,706 + ABZR87_RS19780 0.71 -0.9 810,706 + ABZR87_RS19780 0.71 -0.9 810,707 - ABZR87_RS19780 0.71 -0.0 810,707 - ABZR87_RS19780 0.71 +0.6 810,707 - ABZR87_RS19780 0.71 -0.3 810,707 - ABZR87_RS19780 0.71 +0.3 810,707 - ABZR87_RS19780 0.71 +2.9 810,707 - ABZR87_RS19780 0.71 +0.6 810,754 + ABZR87_RS19780 0.82 +4.1 810,754 + ABZR87_RS19780 0.82 -0.5 810,771 + ABZR87_RS19780 0.86 -0.5 810,847 + +0.1 810,962 - +0.7 810,962 - +1.2 810,962 - -0.5 810,992 - ABZR87_RS19785 0.12 +0.2 811,098 + ABZR87_RS19785 0.21 +0.1 811,098 + ABZR87_RS19785 0.21 -0.2 811,098 + ABZR87_RS19785 0.21 -1.2 811,098 + ABZR87_RS19785 0.21 -0.9 811,098 + ABZR87_RS19785 0.21 +0.2 811,099 - ABZR87_RS19785 0.21 +0.5 811,099 - ABZR87_RS19785 0.21 +0.0 811,099 - ABZR87_RS19785 0.21 -0.5 811,411 + ABZR87_RS19785 0.48 -0.0 811,411 + ABZR87_RS19785 0.48 +0.8 811,412 - ABZR87_RS19785 0.48 -0.7 811,412 - ABZR87_RS19785 0.48 -1.1 811,412 - ABZR87_RS19785 0.48 -0.1 811,465 + ABZR87_RS19785 0.53 -0.5 811,465 + ABZR87_RS19785 0.53 -0.6 811,466 - ABZR87_RS19785 0.53 +0.1 811,466 - ABZR87_RS19785 0.53 -1.2 811,466 - ABZR87_RS19785 0.53 -0.1 811,480 + ABZR87_RS19785 0.54 +0.1 811,481 - ABZR87_RS19785 0.54 -0.1 811,481 - ABZR87_RS19785 0.54 +0.4 811,481 - ABZR87_RS19785 0.54 +0.2 811,481 - ABZR87_RS19785 0.54 -0.6 811,481 - ABZR87_RS19785 0.54 -0.8 811,481 - ABZR87_RS19785 0.54 -0.4 811,595 + ABZR87_RS19785 0.64 +0.1 811,596 - ABZR87_RS19785 0.64 +0.0 811,643 - ABZR87_RS19785 0.68 -0.7 811,756 + ABZR87_RS19785 0.77 +0.2 811,756 - ABZR87_RS19785 0.77 +0.3 811,793 + ABZR87_RS19785 0.80 +0.3 811,794 - ABZR87_RS19785 0.80 +0.4 811,861 + ABZR87_RS19785 0.86 -0.2 811,861 + ABZR87_RS19785 0.86 -0.1 811,861 + ABZR87_RS19785 0.86 -0.8 811,870 + ABZR87_RS19785 0.87 +0.3 811,870 + ABZR87_RS19785 0.87 -1.4 811,870 + ABZR87_RS19785 0.87 +1.9 811,871 - ABZR87_RS19785 0.87 -0.2 811,871 - ABZR87_RS19785 0.87 -0.1 811,871 - ABZR87_RS19785 0.87 +0.7 811,871 - ABZR87_RS19785 0.87 -0.5 811,871 - ABZR87_RS19785 0.87 +0.5 811,874 + ABZR87_RS19785 0.87 -0.7 811,874 + ABZR87_RS19785 0.87 -0.5 811,874 + ABZR87_RS19785 0.87 +0.6 811,874 + ABZR87_RS19785 0.87 -0.8 811,874 + ABZR87_RS19785 0.87 -0.5 811,875 - ABZR87_RS19785 0.87 -0.1 811,875 - ABZR87_RS19785 0.87 -0.4 811,875 - ABZR87_RS19785 0.87 +0.4 811,875 - ABZR87_RS19785 0.87 -0.9 811,875 - ABZR87_RS19785 0.87 -1.6 811,875 - ABZR87_RS19785 0.87 +0.1 811,876 + ABZR87_RS19785 0.87 +1.1 811,877 - ABZR87_RS19785 0.87 -1.0 811,877 - ABZR87_RS19785 0.87 +0.1 812,062 - +0.5 812,204 + ABZR87_RS19790 0.14 +0.2 812,204 + ABZR87_RS19790 0.14 -1.7 812,205 - ABZR87_RS19790 0.15 -0.4 812,205 - ABZR87_RS19790 0.15 -0.4 812,205 - ABZR87_RS19790 0.15 +1.1 812,205 - ABZR87_RS19790 0.15 +0.5 812,244 + ABZR87_RS19790 0.23 -1.0 812,244 + ABZR87_RS19790 0.23 +0.8 812,245 - ABZR87_RS19790 0.23 -0.2 812,245 - ABZR87_RS19790 0.23 -0.6 812,245 - ABZR87_RS19790 0.23 -1.3 812,383 + ABZR87_RS19790 0.52 +0.3 812,441 + ABZR87_RS19790 0.64 +0.3 812,441 + ABZR87_RS19790 0.64 +0.2 812,442 - ABZR87_RS19790 0.64 -0.0 812,442 - ABZR87_RS19790 0.64 +2.3 812,442 - ABZR87_RS19790 0.64 +0.3 812,442 - ABZR87_RS19790 0.64 -0.2 812,444 + ABZR87_RS19790 0.65 -0.1 812,444 + ABZR87_RS19790 0.65 -0.3 812,444 + ABZR87_RS19790 0.65 +2.9 812,444 + ABZR87_RS19790 0.65 -0.7 812,445 - ABZR87_RS19790 0.65 -0.2 812,445 - ABZR87_RS19790 0.65 +1.0 812,501 + ABZR87_RS19790 0.77 -0.5 812,502 - ABZR87_RS19790 0.77 -0.6 812,502 - ABZR87_RS19790 0.77 +0.3 812,502 - ABZR87_RS19790 0.77 -0.1 812,649 + +0.1 812,663 + +0.5 812,663 + -1.8 812,663 + -1.0 812,663 + -0.6 812,664 - +2.1 812,664 - -0.2 812,664 - +1.1 812,664 - -0.7 812,664 - -0.4 812,664 - -0.1 812,664 - -0.6 812,664 - -2.5 812,665 + -0.9 812,665 + +0.4 812,665 + +0.2 812,665 + +0.2 812,666 - +0.1 812,711 + -0.9 812,712 - +0.8 812,740 + -0.9 812,741 - -1.3 812,741 - +0.2 812,741 - +1.1 812,755 + -0.7 812,755 + -0.6 812,756 - -0.6 812,961 - ABZR87_RS19795 0.11 -0.1 812,961 - ABZR87_RS19795 0.11 +0.6 812,978 + ABZR87_RS19795 0.12 -0.4 812,979 - ABZR87_RS19795 0.12 -0.1
Or see this region's nucleotide sequence