Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19585 and ABZR87_RS19590 are separated by 170 nucleotides ABZR87_RS19590 and ABZR87_RS19595 are separated by 59 nucleotides ABZR87_RS19595 and ABZR87_RS19600 are separated by 152 nucleotides ABZR87_RS19600 and ABZR87_RS19605 are separated by 48 nucleotides
ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174
_RS19585
ABZR87_RS19590: ABZR87_RS19590 - hypothetical protein, at 769,345 to 769,635
_RS19590
ABZR87_RS19595: ABZR87_RS19595 - Gfo/Idh/MocA family oxidoreductase, at 769,695 to 770,849
_RS19595
ABZR87_RS19600: ABZR87_RS19600 - antibiotic biosynthesis monooxygenase, at 771,002 to 771,346
_RS19600
ABZR87_RS19605: ABZR87_RS19605 - cytochrome P450, at 771,395 to 772,528
_RS19605
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 768.864 kb on - strand at 768.921 kb on - strand at 768.986 kb on - strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.408 kb on + strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.420 kb on + strand, within ABZR87_RS19590 at 769.420 kb on + strand, within ABZR87_RS19590 at 769.423 kb on - strand, within ABZR87_RS19590 at 769.633 kb on + strand at 769.633 kb on + strand at 769.633 kb on + strand at 769.696 kb on + strand at 769.697 kb on - strand at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.922 kb on - strand, within ABZR87_RS19595 at 769.922 kb on - strand, within ABZR87_RS19595 at 769.996 kb on + strand, within ABZR87_RS19595 at 769.997 kb on - strand, within ABZR87_RS19595 at 770.090 kb on - strand, within ABZR87_RS19595 at 770.245 kb on + strand, within ABZR87_RS19595 at 770.245 kb on + strand, within ABZR87_RS19595 at 770.246 kb on - strand, within ABZR87_RS19595 at 770.246 kb on - strand, within ABZR87_RS19595 at 770.278 kb on + strand, within ABZR87_RS19595 at 770.279 kb on - strand, within ABZR87_RS19595 at 770.539 kb on + strand, within ABZR87_RS19595 at 770.540 kb on - strand, within ABZR87_RS19595 at 770.540 kb on - strand, within ABZR87_RS19595 at 770.540 kb on - strand, within ABZR87_RS19595 at 770.572 kb on + strand, within ABZR87_RS19595 at 770.611 kb on + strand, within ABZR87_RS19595 at 770.611 kb on + strand, within ABZR87_RS19595 at 770.611 kb on + strand, within ABZR87_RS19595 at 770.612 kb on - strand, within ABZR87_RS19595 at 770.612 kb on - strand, within ABZR87_RS19595 at 770.612 kb on - strand, within ABZR87_RS19595 at 770.620 kb on + strand, within ABZR87_RS19595 at 770.773 kb on + strand at 770.774 kb on - strand at 770.795 kb on + strand at 770.844 kb on - strand at 770.933 kb on - strand at 771.294 kb on + strand, within ABZR87_RS19600 at 771.294 kb on + strand, within ABZR87_RS19600 at 771.294 kb on + strand, within ABZR87_RS19600 at 771.295 kb on - strand, within ABZR87_RS19600 at 771.295 kb on - strand, within ABZR87_RS19600 at 771.295 kb on - strand, within ABZR87_RS19600 at 771.438 kb on + strand at 771.438 kb on + strand at 771.605 kb on + strand, within ABZR87_RS19605 at 771.605 kb on + strand, within ABZR87_RS19605 at 771.701 kb on - strand, within ABZR87_RS19605
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 768,864 - +0.6 768,921 - -1.3 768,986 - -0.1 769,019 + +0.2 769,019 + +1.7 769,019 + -0.6 769,019 + -0.3 769,019 + +0.7 769,019 + +1.0 769,019 + +0.8 769,019 + -0.2 769,019 + -0.0 769,019 + -0.9 769,019 + +0.5 769,019 + -0.6 769,019 + +0.5 769,020 - -0.5 769,020 - -1.0 769,020 - +0.2 769,020 - +1.7 769,020 - -0.2 769,020 - -1.2 769,020 - -0.9 769,020 - -0.0 769,020 - -0.4 769,020 - -0.0 769,020 - -0.2 769,408 + ABZR87_RS19590 0.22 -0.3 769,409 - ABZR87_RS19590 0.22 -0.4 769,409 - ABZR87_RS19590 0.22 -0.1 769,409 - ABZR87_RS19590 0.22 +1.0 769,420 + ABZR87_RS19590 0.26 +0.1 769,420 + ABZR87_RS19590 0.26 -0.7 769,423 - ABZR87_RS19590 0.27 -0.5 769,633 + -0.5 769,633 + +0.4 769,633 + -0.3 769,696 + +0.1 769,697 - -0.3 769,921 + ABZR87_RS19595 0.20 +0.1 769,921 + ABZR87_RS19595 0.20 -0.7 769,921 + ABZR87_RS19595 0.20 +0.4 769,921 + ABZR87_RS19595 0.20 -1.8 769,921 + ABZR87_RS19595 0.20 +0.4 769,921 + ABZR87_RS19595 0.20 -1.0 769,921 + ABZR87_RS19595 0.20 -0.7 769,922 - ABZR87_RS19595 0.20 +0.7 769,922 - ABZR87_RS19595 0.20 -0.7 769,996 + ABZR87_RS19595 0.26 -0.8 769,997 - ABZR87_RS19595 0.26 -0.2 770,090 - ABZR87_RS19595 0.34 +0.1 770,245 + ABZR87_RS19595 0.48 +0.1 770,245 + ABZR87_RS19595 0.48 -1.1 770,246 - ABZR87_RS19595 0.48 +0.1 770,246 - ABZR87_RS19595 0.48 +0.3 770,278 + ABZR87_RS19595 0.50 +0.5 770,279 - ABZR87_RS19595 0.51 +0.3 770,539 + ABZR87_RS19595 0.73 +0.0 770,540 - ABZR87_RS19595 0.73 -1.1 770,540 - ABZR87_RS19595 0.73 -0.1 770,540 - ABZR87_RS19595 0.73 +0.4 770,572 + ABZR87_RS19595 0.76 -1.0 770,611 + ABZR87_RS19595 0.79 -0.3 770,611 + ABZR87_RS19595 0.79 -1.0 770,611 + ABZR87_RS19595 0.79 +1.1 770,612 - ABZR87_RS19595 0.79 +0.7 770,612 - ABZR87_RS19595 0.79 -1.0 770,612 - ABZR87_RS19595 0.79 +0.3 770,620 + ABZR87_RS19595 0.80 -0.0 770,773 + -1.4 770,774 - -0.0 770,795 + +0.4 770,844 - -0.6 770,933 - +0.5 771,294 + ABZR87_RS19600 0.85 +2.1 771,294 + ABZR87_RS19600 0.85 +1.5 771,294 + ABZR87_RS19600 0.85 +0.1 771,295 - ABZR87_RS19600 0.85 -0.2 771,295 - ABZR87_RS19600 0.85 +1.0 771,295 - ABZR87_RS19600 0.85 -0.0 771,438 + -0.0 771,438 + -0.4 771,605 + ABZR87_RS19605 0.19 +0.4 771,605 + ABZR87_RS19605 0.19 -0.7 771,701 - ABZR87_RS19605 0.27 +1.6
Or see this region's nucleotide sequence