Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19575 and ABZR87_RS19580 are separated by 106 nucleotides ABZR87_RS19580 and ABZR87_RS19585 are separated by 150 nucleotides
ABZR87_RS19575: ABZR87_RS19575 - sigma-54-dependent Fis family transcriptional regulator, at 763,471 to 764,886
_RS19575
ABZR87_RS19580: ABZR87_RS19580 - DUF2968 domain-containing protein, at 764,993 to 765,784
_RS19580
ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174
_RS19585
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.128 kb on + strand, within ABZR87_RS19575 at 764.128 kb on + strand, within ABZR87_RS19575 at 764.128 kb on + strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.129 kb on - strand, within ABZR87_RS19575 at 764.143 kb on + strand, within ABZR87_RS19575 at 764.203 kb on + strand, within ABZR87_RS19575 at 764.204 kb on - strand, within ABZR87_RS19575 at 764.204 kb on - strand, within ABZR87_RS19575 at 764.356 kb on + strand, within ABZR87_RS19575 at 764.356 kb on + strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.357 kb on - strand, within ABZR87_RS19575 at 764.525 kb on - strand, within ABZR87_RS19575 at 764.668 kb on - strand, within ABZR87_RS19575 at 764.842 kb on + strand at 764.843 kb on - strand at 764.843 kb on - strand at 764.843 kb on - strand at 764.892 kb on + strand at 764.892 kb on + strand at 764.892 kb on + strand at 764.892 kb on + strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.893 kb on - strand at 764.903 kb on - strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.950 kb on + strand at 764.951 kb on - strand at 764.951 kb on - strand at 764.951 kb on - strand at 764.951 kb on - strand at 765.083 kb on - strand, within ABZR87_RS19580 at 765.279 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.464 kb on + strand, within ABZR87_RS19580 at 765.464 kb on + strand, within ABZR87_RS19580 at 765.465 kb on - strand, within ABZR87_RS19580 at 765.465 kb on - strand, within ABZR87_RS19580 at 765.605 kb on - strand, within ABZR87_RS19580 at 765.843 kb on - strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.898 kb on - strand at 765.898 kb on - strand at 765.898 kb on - strand at 766.000 kb on + strand at 766.001 kb on - strand at 766.001 kb on - strand at 766.001 kb on - strand at 766.097 kb on + strand at 766.136 kb on + strand at 766.136 kb on + strand at 766.137 kb on - strand at 766.322 kb on + strand, within ABZR87_RS19585 at 766.323 kb on - strand, within ABZR87_RS19585 at 766.477 kb on + strand, within ABZR87_RS19585
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 764,128 + ABZR87_RS19575 0.46 -1.1 764,128 + ABZR87_RS19575 0.46 -2.0 764,128 + ABZR87_RS19575 0.46 -1.6 764,129 - ABZR87_RS19575 0.46 -0.9 764,129 - ABZR87_RS19575 0.46 -2.8 764,129 - ABZR87_RS19575 0.46 -1.6 764,129 - ABZR87_RS19575 0.46 -1.3 764,129 - ABZR87_RS19575 0.46 -1.7 764,143 + ABZR87_RS19575 0.47 -1.8 764,203 + ABZR87_RS19575 0.52 -2.0 764,204 - ABZR87_RS19575 0.52 -0.8 764,204 - ABZR87_RS19575 0.52 -0.8 764,356 + ABZR87_RS19575 0.62 -0.4 764,356 + ABZR87_RS19575 0.62 -0.9 764,357 - ABZR87_RS19575 0.63 +0.4 764,357 - ABZR87_RS19575 0.63 -2.3 764,357 - ABZR87_RS19575 0.63 -1.9 764,357 - ABZR87_RS19575 0.63 -0.7 764,357 - ABZR87_RS19575 0.63 +0.8 764,357 - ABZR87_RS19575 0.63 -0.9 764,525 - ABZR87_RS19575 0.74 -1.9 764,668 - ABZR87_RS19575 0.85 -0.5 764,842 + -0.7 764,843 - +0.3 764,843 - -0.6 764,843 - -1.2 764,892 + -1.2 764,892 + -0.8 764,892 + +0.7 764,892 + -2.0 764,893 - -0.5 764,893 - +1.2 764,893 - -0.4 764,893 - -0.4 764,893 - +0.3 764,893 - -0.8 764,893 - -2.1 764,893 - -0.9 764,893 - -1.2 764,893 - -0.5 764,903 - +0.1 764,948 + +0.6 764,949 - -0.7 764,949 - -1.3 764,949 - -0.6 764,950 + +3.3 764,951 - -0.6 764,951 - +0.5 764,951 - -0.7 764,951 - -2.5 765,083 - ABZR87_RS19580 0.11 -1.0 765,279 + ABZR87_RS19580 0.36 -3.2 765,335 + ABZR87_RS19580 0.43 +1.1 765,335 + ABZR87_RS19580 0.43 -0.5 765,335 + ABZR87_RS19580 0.43 -0.7 765,335 + ABZR87_RS19580 0.43 -2.2 765,335 + ABZR87_RS19580 0.43 -0.7 765,336 - ABZR87_RS19580 0.43 -1.2 765,336 - ABZR87_RS19580 0.43 +0.9 765,336 - ABZR87_RS19580 0.43 -1.7 765,336 - ABZR87_RS19580 0.43 -1.4 765,336 - ABZR87_RS19580 0.43 +0.6 765,336 - ABZR87_RS19580 0.43 -2.3 765,336 - ABZR87_RS19580 0.43 -0.9 765,347 + ABZR87_RS19580 0.45 -1.0 765,347 + ABZR87_RS19580 0.45 -0.7 765,347 + ABZR87_RS19580 0.45 -1.1 765,386 + ABZR87_RS19580 0.50 -0.4 765,386 + ABZR87_RS19580 0.50 -0.5 765,386 + ABZR87_RS19580 0.50 -1.5 765,386 + ABZR87_RS19580 0.50 -0.9 765,387 - ABZR87_RS19580 0.50 -1.8 765,387 - ABZR87_RS19580 0.50 -2.2 765,387 - ABZR87_RS19580 0.50 -1.3 765,387 - ABZR87_RS19580 0.50 -2.3 765,387 - ABZR87_RS19580 0.50 -1.6 765,387 - ABZR87_RS19580 0.50 -0.8 765,387 - ABZR87_RS19580 0.50 -2.4 765,389 + ABZR87_RS19580 0.50 -1.1 765,389 + ABZR87_RS19580 0.50 -0.9 765,389 + ABZR87_RS19580 0.50 -0.4 765,389 + ABZR87_RS19580 0.50 -0.8 765,389 + ABZR87_RS19580 0.50 -0.5 765,389 + ABZR87_RS19580 0.50 -0.6 765,389 + ABZR87_RS19580 0.50 -0.1 765,389 + ABZR87_RS19580 0.50 -0.6 765,390 - ABZR87_RS19580 0.50 -0.0 765,390 - ABZR87_RS19580 0.50 -0.5 765,390 - ABZR87_RS19580 0.50 -2.7 765,390 - ABZR87_RS19580 0.50 -2.4 765,464 + ABZR87_RS19580 0.59 -0.8 765,464 + ABZR87_RS19580 0.59 -1.3 765,465 - ABZR87_RS19580 0.60 -0.6 765,465 - ABZR87_RS19580 0.60 -1.5 765,605 - ABZR87_RS19580 0.77 -1.5 765,843 - +0.6 765,897 + +0.1 765,897 + -0.7 765,897 + -0.9 765,897 + -2.3 765,897 + +1.8 765,897 + -0.3 765,898 - +1.1 765,898 - +0.5 765,898 - -2.1 766,000 + -0.1 766,001 - +0.2 766,001 - +0.7 766,001 - -0.1 766,097 + -2.4 766,136 + +0.0 766,136 + +0.5 766,137 - -0.5 766,322 + ABZR87_RS19585 0.12 +0.1 766,323 - ABZR87_RS19585 0.12 -0.0 766,477 + ABZR87_RS19585 0.17 +1.3
Or see this region's nucleotide sequence