Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotides ABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotides ABZR87_RS19565 and ABZR87_RS19570 are separated by 91 nucleotides
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394
_RS19560
ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720
_RS19565
ABZR87_RS19570: ABZR87_RS19570 - TadG family pilus assembly protein, at 761,812 to 763,455
_RS19570
Position (kb) 760
761
762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 759.804 kb on + strand, within ABZR87_RS19555 at 759.805 kb on - strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.940 kb on - strand, within ABZR87_RS19555 at 759.950 kb on + strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 760.181 kb on + strand, within ABZR87_RS19555 at 760.223 kb on + strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.442 kb on + strand at 760.442 kb on + strand at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.699 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.721 kb on - strand, within ABZR87_RS19560 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.568 kb on + strand, within ABZR87_RS19565 at 761.569 kb on - strand, within ABZR87_RS19565 at 761.569 kb on - strand, within ABZR87_RS19565 at 761.569 kb on - strand, within ABZR87_RS19565 at 761.616 kb on + strand, within ABZR87_RS19565 at 761.881 kb on + strand at 761.882 kb on - strand at 762.064 kb on + strand, within ABZR87_RS19570 at 762.064 kb on + strand, within ABZR87_RS19570 at 762.064 kb on + strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.065 kb on - strand, within ABZR87_RS19570 at 762.096 kb on + strand, within ABZR87_RS19570 at 762.096 kb on + strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.097 kb on - strand, within ABZR87_RS19570 at 762.238 kb on - strand, within ABZR87_RS19570 at 762.305 kb on - strand, within ABZR87_RS19570
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 759,804 + ABZR87_RS19555 0.34 -1.3 759,805 - ABZR87_RS19555 0.34 -0.5 759,842 + ABZR87_RS19555 0.38 -2.1 759,842 + ABZR87_RS19555 0.38 +0.0 759,843 - ABZR87_RS19555 0.38 -0.7 759,843 - ABZR87_RS19555 0.38 -1.5 759,940 - ABZR87_RS19555 0.48 -0.6 759,950 + ABZR87_RS19555 0.49 -1.6 759,951 - ABZR87_RS19555 0.49 -0.8 759,951 - ABZR87_RS19555 0.49 -2.6 759,951 - ABZR87_RS19555 0.49 -1.3 759,951 - ABZR87_RS19555 0.49 -2.6 759,951 - ABZR87_RS19555 0.49 -3.8 759,951 - ABZR87_RS19555 0.49 -0.2 760,181 + ABZR87_RS19555 0.72 -0.7 760,223 + ABZR87_RS19555 0.76 -1.6 760,224 - ABZR87_RS19555 0.76 -0.2 760,224 - ABZR87_RS19555 0.76 -0.4 760,442 + -0.4 760,442 + -2.1 760,678 + ABZR87_RS19560 0.23 -0.8 760,678 + ABZR87_RS19560 0.23 -1.3 760,678 + ABZR87_RS19560 0.23 -1.5 760,679 - ABZR87_RS19560 0.24 -1.7 760,679 - ABZR87_RS19560 0.24 -1.4 760,679 - ABZR87_RS19560 0.24 -1.2 760,681 + ABZR87_RS19560 0.24 -1.7 760,681 + ABZR87_RS19560 0.24 -2.9 760,681 + ABZR87_RS19560 0.24 +1.3 760,682 - ABZR87_RS19560 0.24 -1.8 760,682 - ABZR87_RS19560 0.24 -0.3 760,699 - ABZR87_RS19560 0.26 -0.8 760,709 - ABZR87_RS19560 0.27 -1.7 760,709 - ABZR87_RS19560 0.27 -1.9 760,721 - ABZR87_RS19560 0.28 -1.3 761,568 + ABZR87_RS19565 0.54 -1.8 761,568 + ABZR87_RS19565 0.54 -2.3 761,568 + ABZR87_RS19565 0.54 -0.8 761,568 + ABZR87_RS19565 0.54 -2.4 761,569 - ABZR87_RS19565 0.54 -3.0 761,569 - ABZR87_RS19565 0.54 -2.0 761,569 - ABZR87_RS19565 0.54 -2.0 761,616 + ABZR87_RS19565 0.68 -2.2 761,881 + -0.1 761,882 - -0.0 762,064 + ABZR87_RS19570 0.15 +0.7 762,064 + ABZR87_RS19570 0.15 -3.1 762,064 + ABZR87_RS19570 0.15 -1.8 762,065 - ABZR87_RS19570 0.15 -1.0 762,065 - ABZR87_RS19570 0.15 -2.4 762,065 - ABZR87_RS19570 0.15 -2.5 762,065 - ABZR87_RS19570 0.15 -1.5 762,096 + ABZR87_RS19570 0.17 +0.3 762,096 + ABZR87_RS19570 0.17 -1.8 762,097 - ABZR87_RS19570 0.17 -3.2 762,097 - ABZR87_RS19570 0.17 -2.3 762,097 - ABZR87_RS19570 0.17 -0.9 762,097 - ABZR87_RS19570 0.17 -1.4 762,238 - ABZR87_RS19570 0.26 -1.2 762,305 - ABZR87_RS19570 0.30 -0.5
Or see this region's nucleotide sequence