Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19470 and ABZR87_RS19475 are separated by 38 nucleotides ABZR87_RS19475 and ABZR87_RS19480 are separated by 173 nucleotides
ABZR87_RS19470: ABZR87_RS19470 - UDP-glucose 4-epimerase GalE, at 737,725 to 738,750
_RS19470
ABZR87_RS19475: ABZR87_RS19475 - PAS domain-containing protein, at 738,789 to 740,216
_RS19475
ABZR87_RS19480: ABZR87_RS19480 - methyl-accepting chemotaxis protein, at 740,390 to 741,931
_RS19480
Position (kb) 738
739
740
741 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.019 kb on + strand, within ABZR87_RS19470 at 738.020 kb on - strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.127 kb on - strand, within ABZR87_RS19470 at 738.247 kb on + strand, within ABZR87_RS19470 at 738.247 kb on + strand, within ABZR87_RS19470 at 738.248 kb on - strand, within ABZR87_RS19470 at 738.256 kb on + strand, within ABZR87_RS19470 at 738.256 kb on + strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.335 kb on + strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.553 kb on + strand, within ABZR87_RS19470 at 738.583 kb on + strand, within ABZR87_RS19470 at 738.625 kb on + strand, within ABZR87_RS19470 at 738.625 kb on + strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.821 kb on + strand at 738.821 kb on + strand at 738.821 kb on + strand at 738.821 kb on + strand at 738.821 kb on + strand at 738.822 kb on - strand at 739.144 kb on + strand, within ABZR87_RS19475 at 739.192 kb on + strand, within ABZR87_RS19475 at 739.193 kb on - strand, within ABZR87_RS19475 at 739.238 kb on + strand, within ABZR87_RS19475 at 739.239 kb on - strand, within ABZR87_RS19475 at 739.392 kb on + strand, within ABZR87_RS19475 at 739.393 kb on - strand, within ABZR87_RS19475 at 739.518 kb on + strand, within ABZR87_RS19475 at 739.620 kb on + strand, within ABZR87_RS19475 at 739.620 kb on + strand, within ABZR87_RS19475 at 739.620 kb on + strand, within ABZR87_RS19475 at 739.753 kb on - strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.755 kb on - strand, within ABZR87_RS19475 at 739.755 kb on - strand, within ABZR87_RS19475 at 739.755 kb on - strand, within ABZR87_RS19475 at 739.869 kb on + strand, within ABZR87_RS19475 at 739.870 kb on - strand, within ABZR87_RS19475 at 739.908 kb on + strand, within ABZR87_RS19475 at 739.909 kb on - strand, within ABZR87_RS19475 at 739.909 kb on - strand, within ABZR87_RS19475 at 739.909 kb on - strand, within ABZR87_RS19475 at 739.983 kb on - strand, within ABZR87_RS19475 at 740.237 kb on + strand at 740.261 kb on + strand at 740.261 kb on + strand at 740.261 kb on + strand at 740.261 kb on + strand at 740.262 kb on - strand at 740.262 kb on - strand at 740.298 kb on + strand at 740.318 kb on + strand at 740.319 kb on - strand at 740.561 kb on + strand, within ABZR87_RS19480 at 740.561 kb on + strand, within ABZR87_RS19480 at 740.561 kb on + strand, within ABZR87_RS19480 at 740.562 kb on - strand, within ABZR87_RS19480 at 740.657 kb on + strand, within ABZR87_RS19480 at 740.658 kb on - strand, within ABZR87_RS19480 at 740.813 kb on + strand, within ABZR87_RS19480 at 740.861 kb on + strand, within ABZR87_RS19480 at 740.861 kb on + strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.870 kb on + strand, within ABZR87_RS19480 at 740.871 kb on - strand, within ABZR87_RS19480 at 740.871 kb on - strand, within ABZR87_RS19480 at 740.873 kb on + strand, within ABZR87_RS19480 at 740.873 kb on + strand, within ABZR87_RS19480 at 740.874 kb on - strand, within ABZR87_RS19480 at 740.909 kb on + strand, within ABZR87_RS19480 at 740.909 kb on + strand, within ABZR87_RS19480 at 740.909 kb on + strand, within ABZR87_RS19480 at 740.910 kb on - strand, within ABZR87_RS19480 at 740.910 kb on - strand, within ABZR87_RS19480 at 740.910 kb on - strand, within ABZR87_RS19480 at 740.912 kb on - strand, within ABZR87_RS19480 at 740.912 kb on - strand, within ABZR87_RS19480 at 740.912 kb on - strand, within ABZR87_RS19480
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 737,906 + ABZR87_RS19470 0.18 -1.1 737,906 + ABZR87_RS19470 0.18 -0.7 737,906 + ABZR87_RS19470 0.18 -0.3 737,906 + ABZR87_RS19470 0.18 -0.3 737,906 + ABZR87_RS19470 0.18 -1.2 737,906 + ABZR87_RS19470 0.18 +1.1 738,016 + ABZR87_RS19470 0.28 +0.1 738,016 + ABZR87_RS19470 0.28 -0.1 738,016 + ABZR87_RS19470 0.28 -2.6 738,019 + ABZR87_RS19470 0.29 -0.1 738,020 - ABZR87_RS19470 0.29 -2.3 738,112 + ABZR87_RS19470 0.38 -1.4 738,112 + ABZR87_RS19470 0.38 -1.6 738,112 + ABZR87_RS19470 0.38 +0.2 738,112 + ABZR87_RS19470 0.38 -0.6 738,112 + ABZR87_RS19470 0.38 -0.8 738,112 + ABZR87_RS19470 0.38 -0.7 738,113 - ABZR87_RS19470 0.38 +0.3 738,113 - ABZR87_RS19470 0.38 +1.8 738,113 - ABZR87_RS19470 0.38 +0.1 738,113 - ABZR87_RS19470 0.38 +0.0 738,113 - ABZR87_RS19470 0.38 +3.3 738,127 - ABZR87_RS19470 0.39 +0.4 738,247 + ABZR87_RS19470 0.51 -0.1 738,247 + ABZR87_RS19470 0.51 -1.2 738,248 - ABZR87_RS19470 0.51 -0.0 738,256 + ABZR87_RS19470 0.52 -0.1 738,256 + ABZR87_RS19470 0.52 +0.3 738,257 - ABZR87_RS19470 0.52 -0.1 738,257 - ABZR87_RS19470 0.52 -0.3 738,257 - ABZR87_RS19470 0.52 +0.2 738,334 + ABZR87_RS19470 0.59 +0.9 738,334 + ABZR87_RS19470 0.59 -0.6 738,334 + ABZR87_RS19470 0.59 -2.0 738,334 + ABZR87_RS19470 0.59 +1.1 738,335 + ABZR87_RS19470 0.59 -1.6 738,335 - ABZR87_RS19470 0.59 +0.4 738,335 - ABZR87_RS19470 0.59 +0.4 738,335 - ABZR87_RS19470 0.59 +0.4 738,335 - ABZR87_RS19470 0.59 +0.7 738,424 + ABZR87_RS19470 0.68 +0.2 738,424 + ABZR87_RS19470 0.68 -0.0 738,424 + ABZR87_RS19470 0.68 -0.8 738,424 + ABZR87_RS19470 0.68 -0.1 738,425 - ABZR87_RS19470 0.68 -0.6 738,425 - ABZR87_RS19470 0.68 -1.9 738,425 - ABZR87_RS19470 0.68 +0.3 738,425 - ABZR87_RS19470 0.68 +0.7 738,553 + ABZR87_RS19470 0.81 -0.0 738,583 + ABZR87_RS19470 0.84 +0.7 738,625 + ABZR87_RS19470 0.88 +1.4 738,625 + ABZR87_RS19470 0.88 -0.9 738,626 - ABZR87_RS19470 0.88 +0.0 738,626 - ABZR87_RS19470 0.88 +0.9 738,626 - ABZR87_RS19470 0.88 +0.0 738,626 - ABZR87_RS19470 0.88 -0.0 738,821 + -0.7 738,821 + +0.6 738,821 + +0.7 738,821 + +0.2 738,821 + -1.0 738,822 - +0.5 739,144 + ABZR87_RS19475 0.25 +0.3 739,192 + ABZR87_RS19475 0.28 +0.6 739,193 - ABZR87_RS19475 0.28 +0.2 739,238 + ABZR87_RS19475 0.31 +0.0 739,239 - ABZR87_RS19475 0.32 +0.6 739,392 + ABZR87_RS19475 0.42 +0.6 739,393 - ABZR87_RS19475 0.42 -0.1 739,518 + ABZR87_RS19475 0.51 +0.1 739,620 + ABZR87_RS19475 0.58 +0.2 739,620 + ABZR87_RS19475 0.58 +0.2 739,620 + ABZR87_RS19475 0.58 +0.1 739,753 - ABZR87_RS19475 0.68 +1.0 739,754 + ABZR87_RS19475 0.68 +0.2 739,754 + ABZR87_RS19475 0.68 -0.3 739,754 + ABZR87_RS19475 0.68 +0.1 739,754 + ABZR87_RS19475 0.68 +0.9 739,755 - ABZR87_RS19475 0.68 +1.1 739,755 - ABZR87_RS19475 0.68 +1.3 739,755 - ABZR87_RS19475 0.68 +0.9 739,869 + ABZR87_RS19475 0.76 -1.0 739,870 - ABZR87_RS19475 0.76 +0.4 739,908 + ABZR87_RS19475 0.78 -0.0 739,909 - ABZR87_RS19475 0.78 +0.5 739,909 - ABZR87_RS19475 0.78 +0.7 739,909 - ABZR87_RS19475 0.78 +1.2 739,983 - ABZR87_RS19475 0.84 -0.2 740,237 + -0.1 740,261 + +0.3 740,261 + +0.2 740,261 + +0.1 740,261 + -0.6 740,262 - +0.6 740,262 - -0.2 740,298 + +0.2 740,318 + +0.5 740,319 - +0.5 740,561 + ABZR87_RS19480 0.11 +1.6 740,561 + ABZR87_RS19480 0.11 +0.6 740,561 + ABZR87_RS19480 0.11 -0.0 740,562 - ABZR87_RS19480 0.11 -0.1 740,657 + ABZR87_RS19480 0.17 -0.8 740,658 - ABZR87_RS19480 0.17 -1.0 740,813 + ABZR87_RS19480 0.27 -0.6 740,861 + ABZR87_RS19480 0.31 -0.8 740,861 + ABZR87_RS19480 0.31 +0.3 740,862 - ABZR87_RS19480 0.31 +0.7 740,862 - ABZR87_RS19480 0.31 +0.6 740,862 - ABZR87_RS19480 0.31 -0.4 740,862 - ABZR87_RS19480 0.31 +1.4 740,870 + ABZR87_RS19480 0.31 +0.2 740,871 - ABZR87_RS19480 0.31 +0.3 740,871 - ABZR87_RS19480 0.31 +0.4 740,873 + ABZR87_RS19480 0.31 -0.1 740,873 + ABZR87_RS19480 0.31 +0.2 740,874 - ABZR87_RS19480 0.31 -0.8 740,909 + ABZR87_RS19480 0.34 -1.0 740,909 + ABZR87_RS19480 0.34 -0.1 740,909 + ABZR87_RS19480 0.34 +0.7 740,910 - ABZR87_RS19480 0.34 -0.4 740,910 - ABZR87_RS19480 0.34 -0.5 740,910 - ABZR87_RS19480 0.34 -0.0 740,912 - ABZR87_RS19480 0.34 +0.7 740,912 - ABZR87_RS19480 0.34 +0.2 740,912 - ABZR87_RS19480 0.34 +0.1
Or see this region's nucleotide sequence