Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19165 and ABZR87_RS19170 are separated by 2 nucleotides ABZR87_RS19170 and ABZR87_RS19175 are separated by 89 nucleotides
ABZR87_RS19165: ABZR87_RS19165 - TerC family protein, at 663,470 to 665,050
_RS19165
ABZR87_RS19170: ABZR87_RS19170 - DMT family transporter, at 665,053 to 665,970
_RS19170
ABZR87_RS19175: ABZR87_RS19175 - AraC family transcriptional regulator, at 666,060 to 666,839
_RS19175
Position (kb) 665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 664.094 kb on - strand, within ABZR87_RS19165 at 664.106 kb on + strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.112 kb on + strand, within ABZR87_RS19165 at 664.113 kb on - strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.181 kb on + strand, within ABZR87_RS19165 at 664.408 kb on + strand, within ABZR87_RS19165 at 664.408 kb on + strand, within ABZR87_RS19165 at 664.488 kb on + strand, within ABZR87_RS19165 at 664.575 kb on + strand, within ABZR87_RS19165 at 664.576 kb on - strand, within ABZR87_RS19165 at 664.895 kb on + strand at 665.048 kb on + strand at 665.049 kb on - strand at 665.054 kb on + strand at 665.055 kb on - strand at 665.055 kb on - strand at 665.294 kb on + strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.298 kb on - strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.897 kb on - strand at 665.933 kb on + strand at 665.933 kb on + strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.970 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.098 kb on - strand at 666.224 kb on - strand, within ABZR87_RS19175 at 666.224 kb on - strand, within ABZR87_RS19175 at 666.267 kb on + strand, within ABZR87_RS19175 at 666.268 kb on - strand, within ABZR87_RS19175 at 666.430 kb on - strand, within ABZR87_RS19175 at 666.619 kb on + strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.952 kb on + strand at 666.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 664,094 - ABZR87_RS19165 0.39 +0.3 664,106 + ABZR87_RS19165 0.40 -1.3 664,107 - ABZR87_RS19165 0.40 -3.3 664,107 - ABZR87_RS19165 0.40 -1.9 664,112 + ABZR87_RS19165 0.41 +0.2 664,113 - ABZR87_RS19165 0.41 -0.3 664,176 + ABZR87_RS19165 0.45 +1.4 664,176 + ABZR87_RS19165 0.45 +0.3 664,176 + ABZR87_RS19165 0.45 -1.5 664,176 + ABZR87_RS19165 0.45 -1.2 664,177 - ABZR87_RS19165 0.45 +2.3 664,177 - ABZR87_RS19165 0.45 +0.4 664,177 - ABZR87_RS19165 0.45 -0.9 664,181 + ABZR87_RS19165 0.45 -1.6 664,408 + ABZR87_RS19165 0.59 -0.5 664,408 + ABZR87_RS19165 0.59 +0.8 664,488 + ABZR87_RS19165 0.64 +2.3 664,575 + ABZR87_RS19165 0.70 +0.5 664,576 - ABZR87_RS19165 0.70 -0.9 664,895 + -0.4 665,048 + -0.4 665,049 - +1.1 665,054 + +0.1 665,055 - +0.1 665,055 - -1.0 665,294 + ABZR87_RS19170 0.26 -0.7 665,295 - ABZR87_RS19170 0.26 -0.2 665,295 - ABZR87_RS19170 0.26 -0.7 665,297 + ABZR87_RS19170 0.27 -0.7 665,297 + ABZR87_RS19170 0.27 -0.3 665,297 + ABZR87_RS19170 0.27 -0.2 665,298 - ABZR87_RS19170 0.27 +0.6 665,715 + ABZR87_RS19170 0.72 +0.6 665,715 + ABZR87_RS19170 0.72 -1.0 665,716 - ABZR87_RS19170 0.72 -0.5 665,716 - ABZR87_RS19170 0.72 -0.7 665,716 - ABZR87_RS19170 0.72 +2.3 665,897 - -0.7 665,933 + -0.3 665,933 + -0.6 665,934 - +0.5 665,934 - -2.1 665,934 - +0.3 665,970 + +0.3 666,097 + -0.7 666,097 + -0.7 666,097 + -1.3 666,097 + -1.8 666,097 + +0.0 666,097 + -1.1 666,098 - +0.3 666,224 - ABZR87_RS19175 0.21 -0.1 666,224 - ABZR87_RS19175 0.21 +0.2 666,267 + ABZR87_RS19175 0.27 -2.4 666,268 - ABZR87_RS19175 0.27 +0.7 666,430 - ABZR87_RS19175 0.47 +0.6 666,619 + ABZR87_RS19175 0.72 +0.7 666,620 - ABZR87_RS19175 0.72 +1.1 666,620 - ABZR87_RS19175 0.72 +2.8 666,620 - ABZR87_RS19175 0.72 +0.4 666,952 + +0.2 666,952 + -0.7
Or see this region's nucleotide sequence