Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19020

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19015 and ABZR87_RS19020 are separated by 2 nucleotidesABZR87_RS19020 and ABZR87_RS19025 overlap by 4 nucleotides ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027 _RS19015 ABZR87_RS19020: ABZR87_RS19020 - multidrug efflux RND transporter permease subunit, at 625,030 to 628,131 _RS19020 ABZR87_RS19025: ABZR87_RS19025 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 628,128 to 631,262 _RS19025 Position (kb) 625 626 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 624.052 kb on - strand, within ABZR87_RS19015at 624.363 kb on + strand, within ABZR87_RS19015at 624.456 kb on + strand, within ABZR87_RS19015at 624.456 kb on + strand, within ABZR87_RS19015at 624.456 kb on + strand, within ABZR87_RS19015at 624.456 kb on + strand, within ABZR87_RS19015at 624.456 kb on + strand, within ABZR87_RS19015at 624.457 kb on - strand, within ABZR87_RS19015at 624.500 kb on + strand, within ABZR87_RS19015at 624.501 kb on - strand, within ABZR87_RS19015at 624.756 kb on + strand, within ABZR87_RS19015at 624.906 kb on + strandat 624.906 kb on + strandat 624.906 kb on + strandat 624.906 kb on + strandat 624.906 kb on + strandat 624.907 kb on - strandat 624.907 kb on - strandat 624.907 kb on - strandat 624.907 kb on - strandat 624.939 kb on + strandat 624.940 kb on - strandat 625.115 kb on + strandat 625.115 kb on + strandat 625.133 kb on + strandat 625.134 kb on - strandat 625.134 kb on - strandat 625.504 kb on + strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.505 kb on - strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.508 kb on + strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.509 kb on - strand, within ABZR87_RS19020at 625.517 kb on + strand, within ABZR87_RS19020at 625.518 kb on - strand, within ABZR87_RS19020at 625.538 kb on + strand, within ABZR87_RS19020at 625.539 kb on - strand, within ABZR87_RS19020at 625.829 kb on + strand, within ABZR87_RS19020at 625.829 kb on + strand, within ABZR87_RS19020at 625.829 kb on + strand, within ABZR87_RS19020at 625.829 kb on + strand, within ABZR87_RS19020at 625.830 kb on - strand, within ABZR87_RS19020at 625.830 kb on - strand, within ABZR87_RS19020at 625.830 kb on - strand, within ABZR87_RS19020at 625.830 kb on - strand, within ABZR87_RS19020at 625.830 kb on - strand, within ABZR87_RS19020at 625.863 kb on - strand, within ABZR87_RS19020at 625.863 kb on - strand, within ABZR87_RS19020at 625.892 kb on + strand, within ABZR87_RS19020at 625.910 kb on + strand, within ABZR87_RS19020at 625.910 kb on + strand, within ABZR87_RS19020at 625.910 kb on + strand, within ABZR87_RS19020at 625.911 kb on - strand, within ABZR87_RS19020at 625.911 kb on - strand, within ABZR87_RS19020at 625.921 kb on + strand, within ABZR87_RS19020at 625.922 kb on - strand, within ABZR87_RS19020at 625.922 kb on - strand, within ABZR87_RS19020at 626.040 kb on + strand, within ABZR87_RS19020at 626.041 kb on - strand, within ABZR87_RS19020at 626.141 kb on + strand, within ABZR87_RS19020at 626.141 kb on + strand, within ABZR87_RS19020at 626.141 kb on + strand, within ABZR87_RS19020at 626.141 kb on + strand, within ABZR87_RS19020at 626.141 kb on + strand, within ABZR87_RS19020at 626.142 kb on - strand, within ABZR87_RS19020at 626.188 kb on + strand, within ABZR87_RS19020at 626.313 kb on + strand, within ABZR87_RS19020at 626.334 kb on + strand, within ABZR87_RS19020at 626.498 kb on + strand, within ABZR87_RS19020at 626.498 kb on + strand, within ABZR87_RS19020at 626.498 kb on + strand, within ABZR87_RS19020at 626.498 kb on + strand, within ABZR87_RS19020at 626.499 kb on - strand, within ABZR87_RS19020at 626.499 kb on - strand, within ABZR87_RS19020at 626.499 kb on - strand, within ABZR87_RS19020at 626.499 kb on - strand, within ABZR87_RS19020at 626.504 kb on + strand, within ABZR87_RS19020at 626.504 kb on + strand, within ABZR87_RS19020at 626.505 kb on - strand, within ABZR87_RS19020at 626.505 kb on - strand, within ABZR87_RS19020at 626.586 kb on - strand, within ABZR87_RS19020at 626.688 kb on + strand, within ABZR87_RS19020at 626.987 kb on + strand, within ABZR87_RS19020at 626.988 kb on - strand, within ABZR87_RS19020at 626.999 kb on + strand, within ABZR87_RS19020at 626.999 kb on + strand, within ABZR87_RS19020at 626.999 kb on + strand, within ABZR87_RS19020at 626.999 kb on + strand, within ABZR87_RS19020at 626.999 kb on + strand, within ABZR87_RS19020at 627.279 kb on + strand, within ABZR87_RS19020at 627.410 kb on + strand, within ABZR87_RS19020at 627.410 kb on + strand, within ABZR87_RS19020at 627.410 kb on + strand, within ABZR87_RS19020at 627.443 kb on + strand, within ABZR87_RS19020at 627.443 kb on + strand, within ABZR87_RS19020at 627.444 kb on - strand, within ABZR87_RS19020at 627.444 kb on - strand, within ABZR87_RS19020at 627.444 kb on - strand, within ABZR87_RS19020at 627.543 kb on - strand, within ABZR87_RS19020at 627.543 kb on - strand, within ABZR87_RS19020at 627.668 kb on + strand, within ABZR87_RS19020at 627.668 kb on + strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.759 kb on + strand, within ABZR87_RS19020at 627.759 kb on + strand, within ABZR87_RS19020at 627.759 kb on + strand, within ABZR87_RS19020at 628.234 kb on + strandat 628.234 kb on + strandat 628.235 kb on - strandat 628.235 kb on - strandat 628.417 kb on + strandat 628.417 kb on + strandat 628.418 kb on - strandat 628.418 kb on - strandat 628.418 kb on - strandat 628.418 kb on - strandat 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 629.056 kb on + strand, within ABZR87_RS19025at 629.057 kb on - strand, within ABZR87_RS19025at 629.066 kb on - strand, within ABZR87_RS19025at 629.101 kb on + strand, within ABZR87_RS19025

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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624,052 - ABZR87_RS19015 0.35 -0.8
624,363 + ABZR87_RS19015 0.56 +0.5
624,456 + ABZR87_RS19015 0.62 +1.4
624,456 + ABZR87_RS19015 0.62 +0.5
624,456 + ABZR87_RS19015 0.62 +0.6
624,456 + ABZR87_RS19015 0.62 +0.1
624,456 + ABZR87_RS19015 0.62 +0.8
624,457 - ABZR87_RS19015 0.62 +0.2
624,500 + ABZR87_RS19015 0.65 -0.0
624,501 - ABZR87_RS19015 0.65 +1.1
624,756 + ABZR87_RS19015 0.82 +1.5
624,906 + +0.2
624,906 + +0.6
624,906 + +1.7
624,906 + +0.5
624,906 + +0.2
624,907 - +0.6
624,907 - +0.4
624,907 - -1.2
624,907 - +0.4
624,939 + -0.3
624,940 - +0.3
625,115 + -0.2
625,115 + +1.7
625,133 + +0.3
625,134 - +1.5
625,134 - +0.7
625,504 + ABZR87_RS19020 0.15 +0.8
625,505 - ABZR87_RS19020 0.15 +1.0
625,505 - ABZR87_RS19020 0.15 +0.4
625,505 - ABZR87_RS19020 0.15 +0.7
625,505 - ABZR87_RS19020 0.15 +1.2
625,505 - ABZR87_RS19020 0.15 +1.4
625,505 - ABZR87_RS19020 0.15 +0.2
625,505 - ABZR87_RS19020 0.15 +0.1
625,505 - ABZR87_RS19020 0.15 -0.2
625,508 + ABZR87_RS19020 0.15 +0.4
625,508 + ABZR87_RS19020 0.15 +0.6
625,508 + ABZR87_RS19020 0.15 +1.0
625,508 + ABZR87_RS19020 0.15 -0.0
625,508 + ABZR87_RS19020 0.15 +0.4
625,508 + ABZR87_RS19020 0.15 +0.3
625,508 + ABZR87_RS19020 0.15 +0.2
625,508 + ABZR87_RS19020 0.15 -0.2
625,509 - ABZR87_RS19020 0.15 +0.9
625,509 - ABZR87_RS19020 0.15 +0.8
625,509 - ABZR87_RS19020 0.15 +0.1
625,509 - ABZR87_RS19020 0.15 -0.0
625,509 - ABZR87_RS19020 0.15 +0.1
625,509 - ABZR87_RS19020 0.15 +1.4
625,509 - ABZR87_RS19020 0.15 +0.4
625,509 - ABZR87_RS19020 0.15 -1.2
625,509 - ABZR87_RS19020 0.15 +0.8
625,509 - ABZR87_RS19020 0.15 -0.9
625,509 - ABZR87_RS19020 0.15 +0.2
625,509 - ABZR87_RS19020 0.15 +0.6
625,509 - ABZR87_RS19020 0.15 +0.6
625,509 - ABZR87_RS19020 0.15 +0.5
625,517 + ABZR87_RS19020 0.16 +0.6
625,518 - ABZR87_RS19020 0.16 +0.2
625,538 + ABZR87_RS19020 0.16 -0.9
625,539 - ABZR87_RS19020 0.16 +0.4
625,829 + ABZR87_RS19020 0.26 -0.3
625,829 + ABZR87_RS19020 0.26 +1.5
625,829 + ABZR87_RS19020 0.26 -0.9
625,829 + ABZR87_RS19020 0.26 +0.8
625,830 - ABZR87_RS19020 0.26 -0.5
625,830 - ABZR87_RS19020 0.26 +1.0
625,830 - ABZR87_RS19020 0.26 +0.8
625,830 - ABZR87_RS19020 0.26 +1.4
625,830 - ABZR87_RS19020 0.26 +0.4
625,863 - ABZR87_RS19020 0.27 +0.8
625,863 - ABZR87_RS19020 0.27 +0.3
625,892 + ABZR87_RS19020 0.28 -0.2
625,910 + ABZR87_RS19020 0.28 +1.0
625,910 + ABZR87_RS19020 0.28 +0.8
625,910 + ABZR87_RS19020 0.28 +0.2
625,911 - ABZR87_RS19020 0.28 +0.9
625,911 - ABZR87_RS19020 0.28 +0.0
625,921 + ABZR87_RS19020 0.29 +0.2
625,922 - ABZR87_RS19020 0.29 +0.8
625,922 - ABZR87_RS19020 0.29 +0.6
626,040 + ABZR87_RS19020 0.33 +0.3
626,041 - ABZR87_RS19020 0.33 +0.8
626,141 + ABZR87_RS19020 0.36 +1.0
626,141 + ABZR87_RS19020 0.36 -0.0
626,141 + ABZR87_RS19020 0.36 +0.0
626,141 + ABZR87_RS19020 0.36 +0.4
626,141 + ABZR87_RS19020 0.36 +1.0
626,142 - ABZR87_RS19020 0.36 +1.2
626,188 + ABZR87_RS19020 0.37 +0.9
626,313 + ABZR87_RS19020 0.41 -0.1
626,334 + ABZR87_RS19020 0.42 +0.3
626,498 + ABZR87_RS19020 0.47 +0.4
626,498 + ABZR87_RS19020 0.47 +0.3
626,498 + ABZR87_RS19020 0.47 +0.6
626,498 + ABZR87_RS19020 0.47 +0.9
626,499 - ABZR87_RS19020 0.47 -0.9
626,499 - ABZR87_RS19020 0.47 +0.4
626,499 - ABZR87_RS19020 0.47 +0.3
626,499 - ABZR87_RS19020 0.47 +0.6
626,504 + ABZR87_RS19020 0.48 +0.2
626,504 + ABZR87_RS19020 0.48 +0.7
626,505 - ABZR87_RS19020 0.48 +0.2
626,505 - ABZR87_RS19020 0.48 +1.2
626,586 - ABZR87_RS19020 0.50 +0.7
626,688 + ABZR87_RS19020 0.53 +0.1
626,987 + ABZR87_RS19020 0.63 +0.1
626,988 - ABZR87_RS19020 0.63 +0.5
626,999 + ABZR87_RS19020 0.63 +0.1
626,999 + ABZR87_RS19020 0.63 +0.3
626,999 + ABZR87_RS19020 0.63 -0.4
626,999 + ABZR87_RS19020 0.63 +0.1
626,999 + ABZR87_RS19020 0.63 -3.1
627,279 + ABZR87_RS19020 0.73 +0.7
627,410 + ABZR87_RS19020 0.77 +0.9
627,410 + ABZR87_RS19020 0.77 +1.3
627,410 + ABZR87_RS19020 0.77 +1.1
627,443 + ABZR87_RS19020 0.78 -0.9
627,443 + ABZR87_RS19020 0.78 +0.8
627,444 - ABZR87_RS19020 0.78 -0.7
627,444 - ABZR87_RS19020 0.78 +0.7
627,444 - ABZR87_RS19020 0.78 +0.2
627,543 - ABZR87_RS19020 0.81 +0.6
627,543 - ABZR87_RS19020 0.81 -0.2
627,668 + ABZR87_RS19020 0.85 +0.3
627,668 + ABZR87_RS19020 0.85 -0.9
627,669 - ABZR87_RS19020 0.85 +0.8
627,669 - ABZR87_RS19020 0.85 +1.8
627,669 - ABZR87_RS19020 0.85 +1.1
627,669 - ABZR87_RS19020 0.85 +0.5
627,669 - ABZR87_RS19020 0.85 +1.4
627,759 + ABZR87_RS19020 0.88 +1.2
627,759 + ABZR87_RS19020 0.88 +1.1
627,759 + ABZR87_RS19020 0.88 +1.0
628,234 + +0.2
628,234 + +0.6
628,235 - +1.4
628,235 - +1.0
628,417 + +0.7
628,417 + +1.4
628,418 - +2.0
628,418 - +0.7
628,418 - +2.2
628,418 - +0.1
628,657 + ABZR87_RS19025 0.17 -0.6
628,657 + ABZR87_RS19025 0.17 -1.0
628,657 + ABZR87_RS19025 0.17 +0.8
628,657 + ABZR87_RS19025 0.17 +0.3
628,657 + ABZR87_RS19025 0.17 -0.2
628,657 + ABZR87_RS19025 0.17 +0.5
628,657 + ABZR87_RS19025 0.17 +0.4
628,657 + ABZR87_RS19025 0.17 +1.4
628,657 + ABZR87_RS19025 0.17 +0.1
628,657 + ABZR87_RS19025 0.17 +0.3
628,658 - ABZR87_RS19025 0.17 +1.0
628,658 - ABZR87_RS19025 0.17 +0.7
628,658 - ABZR87_RS19025 0.17 +0.5
628,658 - ABZR87_RS19025 0.17 +0.8
628,658 - ABZR87_RS19025 0.17 +1.1
628,658 - ABZR87_RS19025 0.17 +0.5
628,658 - ABZR87_RS19025 0.17 +0.4
629,056 + ABZR87_RS19025 0.30 +1.5
629,057 - ABZR87_RS19025 0.30 -0.2
629,066 - ABZR87_RS19025 0.30 -0.6
629,101 + ABZR87_RS19025 0.31 +1.1

Or see this region's nucleotide sequence