Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18990 and ABZR87_RS18995 are separated by 116 nucleotides ABZR87_RS18995 and ABZR87_RS19000 are separated by 14 nucleotides ABZR87_RS19000 and ABZR87_RS19005 are separated by 650 nucleotides
ABZR87_RS18990: ABZR87_RS18990 - flagellar brake protein, at 618,549 to 619,454
_RS18990
ABZR87_RS18995: ABZR87_RS18995 - GtrA family protein, at 619,571 to 620,083
_RS18995
ABZR87_RS19000: ABZR87_RS19000 - hypothetical protein, at 620,098 to 620,580
_RS19000
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 619.099 kb on + strand, within ABZR87_RS18990 at 619.099 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.259 kb on + strand, within ABZR87_RS18990 at 619.260 kb on - strand, within ABZR87_RS18990 at 619.495 kb on + strand at 619.495 kb on + strand at 619.495 kb on + strand at 619.520 kb on + strand at 619.530 kb on + strand at 619.530 kb on + strand at 619.531 kb on - strand at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.670 kb on - strand, within ABZR87_RS18995 at 619.670 kb on - strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.834 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.928 kb on + strand, within ABZR87_RS18995 at 619.928 kb on + strand, within ABZR87_RS18995 at 619.929 kb on - strand, within ABZR87_RS18995 at 619.929 kb on - strand, within ABZR87_RS18995 at 620.099 kb on + strand at 620.100 kb on - strand at 620.100 kb on - strand at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.403 kb on - strand, within ABZR87_RS19000 at 620.505 kb on + strand, within ABZR87_RS19000 at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.647 kb on - strand at 620.647 kb on - strand at 620.648 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.662 kb on - strand at 620.812 kb on + strand at 620.813 kb on - strand at 620.838 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.019 kb on + strand at 621.020 kb on - strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.281 kb on - strand at 621.416 kb on + strand, within ABZR87_RS19005 at 621.416 kb on + strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 619,099 + ABZR87_RS18990 0.61 +0.6 619,099 + ABZR87_RS18990 0.61 +1.1 619,202 + ABZR87_RS18990 0.72 +0.7 619,202 + ABZR87_RS18990 0.72 -0.0 619,202 + ABZR87_RS18990 0.72 +1.2 619,203 - ABZR87_RS18990 0.72 -0.6 619,203 - ABZR87_RS18990 0.72 -0.2 619,203 - ABZR87_RS18990 0.72 +0.0 619,203 - ABZR87_RS18990 0.72 -0.2 619,203 - ABZR87_RS18990 0.72 -0.2 619,259 + ABZR87_RS18990 0.78 -0.8 619,260 - ABZR87_RS18990 0.78 -0.1 619,495 + +1.0 619,495 + +0.5 619,495 + -0.3 619,520 + +0.1 619,530 + +1.2 619,530 + +1.9 619,531 - -0.6 619,667 + ABZR87_RS18995 0.19 +1.2 619,667 + ABZR87_RS18995 0.19 -1.0 619,667 + ABZR87_RS18995 0.19 +1.7 619,667 + ABZR87_RS18995 0.19 +0.6 619,668 - ABZR87_RS18995 0.19 -1.2 619,668 - ABZR87_RS18995 0.19 -0.8 619,668 - ABZR87_RS18995 0.19 -0.0 619,669 + ABZR87_RS18995 0.19 -0.3 619,669 + ABZR87_RS18995 0.19 +0.5 619,669 + ABZR87_RS18995 0.19 -0.5 619,669 + ABZR87_RS18995 0.19 -0.0 619,669 + ABZR87_RS18995 0.19 -0.0 619,670 - ABZR87_RS18995 0.19 -0.9 619,670 - ABZR87_RS18995 0.19 -1.2 619,703 + ABZR87_RS18995 0.26 +0.9 619,703 + ABZR87_RS18995 0.26 +1.2 619,703 + ABZR87_RS18995 0.26 -0.0 619,703 + ABZR87_RS18995 0.26 +0.8 619,703 + ABZR87_RS18995 0.26 +0.2 619,703 + ABZR87_RS18995 0.26 -1.1 619,703 + ABZR87_RS18995 0.26 +0.4 619,703 + ABZR87_RS18995 0.26 -0.1 619,703 + ABZR87_RS18995 0.26 -0.9 619,703 + ABZR87_RS18995 0.26 -0.3 619,703 + ABZR87_RS18995 0.26 -0.8 619,704 - ABZR87_RS18995 0.26 -0.0 619,704 - ABZR87_RS18995 0.26 +0.7 619,704 - ABZR87_RS18995 0.26 -2.1 619,790 + ABZR87_RS18995 0.43 +0.4 619,790 + ABZR87_RS18995 0.43 +0.1 619,790 + ABZR87_RS18995 0.43 +0.8 619,790 + ABZR87_RS18995 0.43 -0.5 619,791 - ABZR87_RS18995 0.43 -0.0 619,791 - ABZR87_RS18995 0.43 -0.7 619,791 - ABZR87_RS18995 0.43 -0.0 619,791 - ABZR87_RS18995 0.43 -0.1 619,791 - ABZR87_RS18995 0.43 +0.2 619,791 - ABZR87_RS18995 0.43 -0.5 619,791 - ABZR87_RS18995 0.43 -0.4 619,834 + ABZR87_RS18995 0.51 +1.0 619,925 + ABZR87_RS18995 0.69 +0.3 619,925 + ABZR87_RS18995 0.69 +1.4 619,925 + ABZR87_RS18995 0.69 +0.8 619,925 + ABZR87_RS18995 0.69 +1.7 619,926 - ABZR87_RS18995 0.69 -0.1 619,926 - ABZR87_RS18995 0.69 -0.4 619,926 - ABZR87_RS18995 0.69 -1.5 619,926 - ABZR87_RS18995 0.69 +0.2 619,926 - ABZR87_RS18995 0.69 -0.5 619,928 + ABZR87_RS18995 0.70 +0.1 619,928 + ABZR87_RS18995 0.70 +0.3 619,929 - ABZR87_RS18995 0.70 +0.1 619,929 - ABZR87_RS18995 0.70 +0.6 620,099 + +0.8 620,100 - -0.2 620,100 - -0.1 620,218 + ABZR87_RS19000 0.25 +1.5 620,218 + ABZR87_RS19000 0.25 +1.2 620,218 + ABZR87_RS19000 0.25 +1.6 620,218 + ABZR87_RS19000 0.25 +0.6 620,219 - ABZR87_RS19000 0.25 -0.2 620,219 - ABZR87_RS19000 0.25 +1.2 620,219 - ABZR87_RS19000 0.25 -1.1 620,219 - ABZR87_RS19000 0.25 -0.4 620,289 + ABZR87_RS19000 0.40 +1.5 620,289 + ABZR87_RS19000 0.40 +1.3 620,402 + ABZR87_RS19000 0.63 +1.8 620,402 + ABZR87_RS19000 0.63 +1.4 620,403 - ABZR87_RS19000 0.63 -0.5 620,505 + ABZR87_RS19000 0.84 +1.3 620,580 + +1.0 620,580 + +1.9 620,580 + +0.8 620,580 + +0.5 620,580 + +1.7 620,580 + +1.9 620,580 + +1.5 620,581 - -0.3 620,581 - -0.1 620,581 - +0.0 620,581 - +0.6 620,647 - +0.1 620,647 - -0.4 620,648 + +0.9 620,658 + +0.3 620,658 + +1.5 620,658 + +1.6 620,658 + +2.0 620,658 + +2.2 620,658 + +2.2 620,658 + +1.6 620,658 + +2.0 620,659 - +0.3 620,659 - +0.1 620,659 - -0.1 620,659 - +0.4 620,659 - +0.6 620,659 - -0.8 620,661 + +2.3 620,661 + +1.6 620,661 + +2.3 620,662 - -2.0 620,812 + +1.6 620,813 - -0.0 620,838 + +2.6 621,017 + +2.0 621,017 + +3.0 621,017 + +3.8 621,017 + +3.0 621,017 + +3.2 621,017 + +2.4 621,017 + +2.0 621,018 - -0.7 621,018 - -0.0 621,018 - -0.2 621,018 - +0.3 621,018 - -0.3 621,019 + +1.2 621,020 - +0.7 621,252 + +0.9 621,252 + -0.6 621,252 + +0.2 621,252 + -0.4 621,252 + +0.3 621,252 + -0.7 621,252 + -0.3 621,252 + -1.0 621,252 + -0.6 621,253 - -0.4 621,253 - -1.1 621,253 - -0.5 621,253 - -0.3 621,253 - -0.2 621,253 - +0.3 621,253 - +0.1 621,253 - -0.6 621,253 - +1.1 621,253 - -0.8 621,253 - -0.6 621,253 - -1.6 621,253 - -1.1 621,253 - -0.2 621,254 + -0.9 621,254 + -0.9 621,254 + -0.2 621,255 - -0.0 621,255 - +0.4 621,255 - -0.0 621,255 - -0.8 621,281 - -0.0 621,416 + ABZR87_RS19005 0.14 -1.6 621,416 + ABZR87_RS19005 0.14 -0.7 621,417 - ABZR87_RS19005 0.14 -0.4 621,417 - ABZR87_RS19005 0.14 +1.4 621,417 - ABZR87_RS19005 0.14 -0.0 621,417 - ABZR87_RS19005 0.14 -1.8 621,417 - ABZR87_RS19005 0.14 -0.3 621,417 - ABZR87_RS19005 0.14 -1.3 621,497 + ABZR87_RS19005 0.20 -1.3 621,497 + ABZR87_RS19005 0.20 +0.8
Or see this region's nucleotide sequence