Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18695

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18690 and ABZR87_RS18695 are separated by 336 nucleotidesABZR87_RS18695 and ABZR87_RS18700 are separated by 21 nucleotidesABZR87_RS18700 and ABZR87_RS18705 are separated by 24 nucleotides ABZR87_RS18690: ABZR87_RS18690 - sugar ABC transporter substrate-binding protein, at 545,644 to 546,849 _RS18690 ABZR87_RS18695: ABZR87_RS18695 - sugar-binding transcriptional regulator, at 547,186 to 548,139 _RS18695 ABZR87_RS18700: ABZR87_RS18700 - DUF1272 domain-containing protein, at 548,161 to 548,469 _RS18700 ABZR87_RS18705: ABZR87_RS18705 - TraB/GumN family protein, at 548,494 to 549,522 _RS18705 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 546.257 kb on + strand, within ABZR87_RS18690at 546.257 kb on + strand, within ABZR87_RS18690at 546.258 kb on - strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.278 kb on + strand, within ABZR87_RS18690at 546.279 kb on - strand, within ABZR87_RS18690at 546.279 kb on - strand, within ABZR87_RS18690at 546.279 kb on - strand, within ABZR87_RS18690at 546.279 kb on - strand, within ABZR87_RS18690at 546.279 kb on - strand, within ABZR87_RS18690at 546.425 kb on + strand, within ABZR87_RS18690at 546.426 kb on - strand, within ABZR87_RS18690at 546.479 kb on + strand, within ABZR87_RS18690at 546.479 kb on + strand, within ABZR87_RS18690at 546.480 kb on - strand, within ABZR87_RS18690at 546.480 kb on - strand, within ABZR87_RS18690at 546.480 kb on - strand, within ABZR87_RS18690at 546.480 kb on - strand, within ABZR87_RS18690at 546.480 kb on - strand, within ABZR87_RS18690at 546.536 kb on + strand, within ABZR87_RS18690at 546.536 kb on + strand, within ABZR87_RS18690at 546.536 kb on + strand, within ABZR87_RS18690at 546.536 kb on + strand, within ABZR87_RS18690at 546.536 kb on + strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.537 kb on - strand, within ABZR87_RS18690at 546.557 kb on + strand, within ABZR87_RS18690at 546.557 kb on + strand, within ABZR87_RS18690at 546.558 kb on - strand, within ABZR87_RS18690at 546.558 kb on - strand, within ABZR87_RS18690at 546.558 kb on - strand, within ABZR87_RS18690at 546.632 kb on + strand, within ABZR87_RS18690at 546.632 kb on + strand, within ABZR87_RS18690at 546.633 kb on - strand, within ABZR87_RS18690at 546.633 kb on - strand, within ABZR87_RS18690at 546.693 kb on - strand, within ABZR87_RS18690at 546.693 kb on - strand, within ABZR87_RS18690at 547.157 kb on + strandat 547.158 kb on - strandat 547.158 kb on - strandat 547.158 kb on - strandat 547.168 kb on + strandat 547.168 kb on + strandat 547.168 kb on + strandat 547.169 kb on - strandat 547.169 kb on - strandat 547.169 kb on - strandat 547.169 kb on - strandat 547.171 kb on + strandat 547.171 kb on + strandat 547.171 kb on + strandat 547.171 kb on + strandat 547.171 kb on + strandat 547.172 kb on - strandat 547.172 kb on - strandat 547.172 kb on - strandat 547.237 kb on + strandat 547.237 kb on + strandat 547.237 kb on + strandat 547.237 kb on + strandat 547.237 kb on + strandat 547.238 kb on - strandat 547.238 kb on - strandat 547.238 kb on - strandat 547.240 kb on + strandat 547.240 kb on + strandat 547.240 kb on + strandat 547.240 kb on + strandat 547.241 kb on - strandat 547.241 kb on - strandat 547.241 kb on - strandat 547.241 kb on - strandat 547.318 kb on + strand, within ABZR87_RS18695at 547.318 kb on + strand, within ABZR87_RS18695at 547.319 kb on - strand, within ABZR87_RS18695at 547.654 kb on + strand, within ABZR87_RS18695at 547.697 kb on - strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.699 kb on + strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.700 kb on - strand, within ABZR87_RS18695at 547.769 kb on - strand, within ABZR87_RS18695at 547.769 kb on - strand, within ABZR87_RS18695at 547.769 kb on - strand, within ABZR87_RS18695at 547.977 kb on + strand, within ABZR87_RS18695at 547.977 kb on + strand, within ABZR87_RS18695at 547.977 kb on + strand, within ABZR87_RS18695at 547.978 kb on - strand, within ABZR87_RS18695at 548.313 kb on + strand, within ABZR87_RS18700at 548.313 kb on + strand, within ABZR87_RS18700at 548.314 kb on - strand, within ABZR87_RS18700at 548.371 kb on + strand, within ABZR87_RS18700at 548.371 kb on + strand, within ABZR87_RS18700at 548.371 kb on + strand, within ABZR87_RS18700at 548.372 kb on - strand, within ABZR87_RS18700at 548.382 kb on + strand, within ABZR87_RS18700at 548.383 kb on - strand, within ABZR87_RS18700at 548.383 kb on - strand, within ABZR87_RS18700at 548.475 kb on + strandat 548.534 kb on + strandat 548.534 kb on + strandat 548.534 kb on + strandat 548.534 kb on + strandat 548.729 kb on + strand, within ABZR87_RS18705at 548.729 kb on + strand, within ABZR87_RS18705at 548.933 kb on + strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.969 kb on + strand, within ABZR87_RS18705

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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546,257 + ABZR87_RS18690 0.51 +0.0
546,257 + ABZR87_RS18690 0.51 -1.0
546,258 - ABZR87_RS18690 0.51 +0.4
546,278 + ABZR87_RS18690 0.53 +0.4
546,278 + ABZR87_RS18690 0.53 -0.7
546,278 + ABZR87_RS18690 0.53 -1.3
546,278 + ABZR87_RS18690 0.53 +0.4
546,278 + ABZR87_RS18690 0.53 -0.3
546,278 + ABZR87_RS18690 0.53 +0.7
546,278 + ABZR87_RS18690 0.53 +0.0
546,279 - ABZR87_RS18690 0.53 +0.6
546,279 - ABZR87_RS18690 0.53 -1.2
546,279 - ABZR87_RS18690 0.53 +0.6
546,279 - ABZR87_RS18690 0.53 -1.0
546,279 - ABZR87_RS18690 0.53 -0.1
546,425 + ABZR87_RS18690 0.65 -1.7
546,426 - ABZR87_RS18690 0.65 +0.1
546,479 + ABZR87_RS18690 0.69 +0.9
546,479 + ABZR87_RS18690 0.69 +0.2
546,480 - ABZR87_RS18690 0.69 -0.5
546,480 - ABZR87_RS18690 0.69 -1.3
546,480 - ABZR87_RS18690 0.69 -0.4
546,480 - ABZR87_RS18690 0.69 -0.6
546,480 - ABZR87_RS18690 0.69 +0.2
546,536 + ABZR87_RS18690 0.74 -0.6
546,536 + ABZR87_RS18690 0.74 -0.6
546,536 + ABZR87_RS18690 0.74 +0.2
546,536 + ABZR87_RS18690 0.74 -0.3
546,536 + ABZR87_RS18690 0.74 -0.6
546,537 - ABZR87_RS18690 0.74 -0.7
546,537 - ABZR87_RS18690 0.74 +0.4
546,537 - ABZR87_RS18690 0.74 -0.6
546,537 - ABZR87_RS18690 0.74 -0.9
546,537 - ABZR87_RS18690 0.74 +1.2
546,537 - ABZR87_RS18690 0.74 -0.4
546,537 - ABZR87_RS18690 0.74 +2.0
546,557 + ABZR87_RS18690 0.76 -0.9
546,557 + ABZR87_RS18690 0.76 -0.4
546,558 - ABZR87_RS18690 0.76 -0.2
546,558 - ABZR87_RS18690 0.76 -0.4
546,558 - ABZR87_RS18690 0.76 -0.8
546,632 + ABZR87_RS18690 0.82 +0.5
546,632 + ABZR87_RS18690 0.82 -2.1
546,633 - ABZR87_RS18690 0.82 +0.4
546,633 - ABZR87_RS18690 0.82 -0.1
546,693 - ABZR87_RS18690 0.87 +0.1
546,693 - ABZR87_RS18690 0.87 -0.1
547,157 + -0.8
547,158 - +0.2
547,158 - +0.2
547,158 - -0.2
547,168 + +0.0
547,168 + +0.0
547,168 + +0.0
547,169 - -0.1
547,169 - -0.8
547,169 - +0.6
547,169 - +0.4
547,171 + +1.3
547,171 + -0.1
547,171 + +0.2
547,171 + +0.2
547,171 + +0.1
547,172 - +0.2
547,172 - +1.0
547,172 - -0.5
547,237 + -0.7
547,237 + +0.4
547,237 + +0.1
547,237 + +0.5
547,237 + -0.8
547,238 - -0.3
547,238 - -3.2
547,238 - -2.1
547,240 + +0.2
547,240 + -1.2
547,240 + -0.4
547,240 + +0.6
547,241 - +0.5
547,241 - -1.5
547,241 - -1.9
547,241 - +1.6
547,318 + ABZR87_RS18695 0.14 -1.1
547,318 + ABZR87_RS18695 0.14 -0.6
547,319 - ABZR87_RS18695 0.14 -0.3
547,654 + ABZR87_RS18695 0.49 -1.7
547,697 - ABZR87_RS18695 0.54 -1.5
547,699 + ABZR87_RS18695 0.54 -0.9
547,699 + ABZR87_RS18695 0.54 -1.8
547,699 + ABZR87_RS18695 0.54 -1.4
547,699 + ABZR87_RS18695 0.54 -0.5
547,700 - ABZR87_RS18695 0.54 -0.2
547,700 - ABZR87_RS18695 0.54 -1.5
547,700 - ABZR87_RS18695 0.54 -1.4
547,700 - ABZR87_RS18695 0.54 -0.7
547,700 - ABZR87_RS18695 0.54 -2.4
547,700 - ABZR87_RS18695 0.54 -2.0
547,700 - ABZR87_RS18695 0.54 -2.0
547,769 - ABZR87_RS18695 0.61 -1.5
547,769 - ABZR87_RS18695 0.61 -1.5
547,769 - ABZR87_RS18695 0.61 -1.4
547,977 + ABZR87_RS18695 0.83 -1.0
547,977 + ABZR87_RS18695 0.83 +0.6
547,977 + ABZR87_RS18695 0.83 -3.1
547,978 - ABZR87_RS18695 0.83 -1.4
548,313 + ABZR87_RS18700 0.49 -0.5
548,313 + ABZR87_RS18700 0.49 -1.0
548,314 - ABZR87_RS18700 0.50 +0.0
548,371 + ABZR87_RS18700 0.68 -0.1
548,371 + ABZR87_RS18700 0.68 -0.2
548,371 + ABZR87_RS18700 0.68 -0.8
548,372 - ABZR87_RS18700 0.68 -0.8
548,382 + ABZR87_RS18700 0.72 -0.5
548,383 - ABZR87_RS18700 0.72 +0.6
548,383 - ABZR87_RS18700 0.72 -1.3
548,475 + -2.1
548,534 + -0.6
548,534 + -0.5
548,534 + +0.2
548,534 + -0.2
548,729 + ABZR87_RS18705 0.23 +0.6
548,729 + ABZR87_RS18705 0.23 +0.6
548,933 + ABZR87_RS18705 0.43 -1.4
548,934 - ABZR87_RS18705 0.43 +0.5
548,934 - ABZR87_RS18705 0.43 +0.1
548,934 - ABZR87_RS18705 0.43 +0.8
548,934 - ABZR87_RS18705 0.43 +0.5
548,969 + ABZR87_RS18705 0.46 -0.9

Or see this region's nucleotide sequence