Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18625 and ABZR87_RS18630 are separated by 101 nucleotides ABZR87_RS18630 and ABZR87_RS18635 are separated by 190 nucleotides
ABZR87_RS18625: ABZR87_RS18625 - sensor domain-containing diguanylate cyclase, at 530,688 to 531,734
_RS18625
ABZR87_RS18630: ABZR87_RS18630 - class II fumarate hydratase, at 531,836 to 533,221
_RS18630
ABZR87_RS18635: ABZR87_RS18635 - multidrug transporter subunit MdtD, at 533,412 to 534,842
_RS18635
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.924 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.046 kb on + strand, within ABZR87_RS18625 at 531.047 kb on - strand, within ABZR87_RS18625 at 531.050 kb on + strand, within ABZR87_RS18625 at 531.051 kb on - strand, within ABZR87_RS18625 at 531.353 kb on + strand, within ABZR87_RS18625 at 531.364 kb on + strand, within ABZR87_RS18625 at 531.397 kb on + strand, within ABZR87_RS18625 at 531.397 kb on + strand, within ABZR87_RS18625 at 531.397 kb on + strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.398 kb on - strand, within ABZR87_RS18625 at 531.408 kb on - strand, within ABZR87_RS18625 at 531.838 kb on - strand at 531.894 kb on + strand at 531.895 kb on - strand at 531.895 kb on - strand at 531.973 kb on - strand at 532.125 kb on + strand, within ABZR87_RS18630 at 532.126 kb on - strand, within ABZR87_RS18630 at 532.614 kb on + strand, within ABZR87_RS18630 at 533.263 kb on + strand at 533.263 kb on + strand at 533.265 kb on + strand at 533.265 kb on + strand at 533.266 kb on - strand at 533.295 kb on - strand at 533.587 kb on - strand, within ABZR87_RS18635
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 530,924 + ABZR87_RS18625 0.23 +0.1 531,046 + ABZR87_RS18625 0.34 -1.8 531,046 + ABZR87_RS18625 0.34 -0.9 531,046 + ABZR87_RS18625 0.34 -0.6 531,046 + ABZR87_RS18625 0.34 -0.6 531,047 - ABZR87_RS18625 0.34 +0.5 531,050 + ABZR87_RS18625 0.35 -0.8 531,051 - ABZR87_RS18625 0.35 -1.2 531,353 + ABZR87_RS18625 0.64 -0.5 531,364 + ABZR87_RS18625 0.65 +0.3 531,397 + ABZR87_RS18625 0.68 +1.3 531,397 + ABZR87_RS18625 0.68 -1.6 531,397 + ABZR87_RS18625 0.68 +1.3 531,398 - ABZR87_RS18625 0.68 +1.2 531,398 - ABZR87_RS18625 0.68 -1.5 531,398 - ABZR87_RS18625 0.68 +0.4 531,398 - ABZR87_RS18625 0.68 +0.5 531,398 - ABZR87_RS18625 0.68 -0.0 531,398 - ABZR87_RS18625 0.68 -0.3 531,408 - ABZR87_RS18625 0.69 -0.3 531,838 - +0.6 531,894 + -0.1 531,895 - -0.0 531,895 - -0.4 531,973 - +0.3 532,125 + ABZR87_RS18630 0.21 +1.7 532,126 - ABZR87_RS18630 0.21 -0.0 532,614 + ABZR87_RS18630 0.56 +0.6 533,263 + -0.3 533,263 + -1.7 533,265 + +0.8 533,265 + +2.0 533,266 - -0.4 533,295 - +1.6 533,587 - ABZR87_RS18635 0.12 +0.1
Or see this region's nucleotide sequence