Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18410 and ABZR87_RS18415 are separated by 713 nucleotides ABZR87_RS18415 and ABZR87_RS18420 are separated by 122 nucleotides ABZR87_RS18420 and ABZR87_RS18425 are separated by 59 nucleotides ABZR87_RS18425 and ABZR87_RS18430 are separated by 97 nucleotides
ABZR87_RS18410: ABZR87_RS18410 - hypothetical protein, at 494,393 to 494,626
_RS18410
ABZR87_RS18415: ABZR87_RS18415 - hypothetical protein, at 495,340 to 495,666
_RS18415
ABZR87_RS18420: ABZR87_RS18420 - hypothetical protein, at 495,789 to 496,169
_RS18420
ABZR87_RS18425: ABZR87_RS18425 - hypothetical protein, at 496,229 to 496,519
_RS18425
ABZR87_RS18430: ABZR87_RS18430 - LysR family transcriptional regulator, at 496,617 to 497,537
_RS18430
Position (kb) 495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 494.488 kb on + strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.507 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.604 kb on + strand at 494.702 kb on - strand at 494.715 kb on + strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.801 kb on + strand at 494.802 kb on - strand at 494.802 kb on - strand at 494.804 kb on + strand at 494.804 kb on + strand at 494.805 kb on - strand at 494.805 kb on - strand at 494.846 kb on + strand at 494.846 kb on + strand at 494.847 kb on - strand at 494.847 kb on - strand at 494.884 kb on - strand at 494.884 kb on - strand at 494.910 kb on + strand at 494.911 kb on - strand at 494.911 kb on - strand at 494.972 kb on + strand at 494.972 kb on + strand at 494.986 kb on - strand at 495.127 kb on + strand at 495.127 kb on + strand at 495.127 kb on + strand at 495.186 kb on + strand at 495.186 kb on + strand at 495.187 kb on - strand at 495.321 kb on + strand at 495.321 kb on + strand at 495.321 kb on + strand at 495.322 kb on - strand at 495.360 kb on + strand at 495.385 kb on - strand, within ABZR87_RS18415 at 495.489 kb on + strand, within ABZR87_RS18415 at 495.856 kb on - strand, within ABZR87_RS18420 at 495.856 kb on - strand, within ABZR87_RS18420 at 495.875 kb on + strand, within ABZR87_RS18420 at 495.876 kb on - strand, within ABZR87_RS18420 at 496.130 kb on - strand, within ABZR87_RS18420 at 496.167 kb on + strand at 496.168 kb on - strand at 496.168 kb on - strand at 496.173 kb on + strand at 496.173 kb on + strand at 496.195 kb on + strand at 496.195 kb on + strand at 496.195 kb on + strand at 496.195 kb on + strand at 496.196 kb on - strand at 496.196 kb on - strand at 496.253 kb on + strand at 496.283 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.334 kb on + strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.335 kb on - strand, within ABZR87_RS18425 at 496.378 kb on + strand, within ABZR87_RS18425 at 496.379 kb on - strand, within ABZR87_RS18425 at 496.379 kb on - strand, within ABZR87_RS18425 at 496.393 kb on + strand, within ABZR87_RS18425 at 496.393 kb on + strand, within ABZR87_RS18425 at 496.393 kb on + strand, within ABZR87_RS18425 at 496.517 kb on + strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.518 kb on - strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.525 kb on + strand at 496.526 kb on - strand at 496.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 494,488 + ABZR87_RS18410 0.41 -0.2 494,489 - ABZR87_RS18410 0.41 +1.0 494,489 - ABZR87_RS18410 0.41 -0.1 494,507 - ABZR87_RS18410 0.49 -0.4 494,551 - ABZR87_RS18410 0.68 +0.2 494,551 - ABZR87_RS18410 0.68 -0.7 494,551 - ABZR87_RS18410 0.68 +0.9 494,589 + ABZR87_RS18410 0.84 +0.4 494,589 + ABZR87_RS18410 0.84 +0.6 494,604 + -0.7 494,702 - -1.9 494,715 + +0.4 494,781 + -0.1 494,782 - +0.1 494,782 - -0.3 494,801 + -0.6 494,802 - +0.1 494,802 - +0.6 494,804 + -0.9 494,804 + +0.2 494,805 - +1.2 494,805 - -0.4 494,846 + +0.2 494,846 + +0.2 494,847 - -0.3 494,847 - +2.0 494,884 - -0.6 494,884 - -1.2 494,910 + -1.8 494,911 - -0.9 494,911 - -1.9 494,972 + -0.2 494,972 + -0.3 494,986 - -1.4 495,127 + +0.4 495,127 + +0.5 495,127 + -0.0 495,186 + -0.4 495,186 + +0.4 495,187 - +0.6 495,321 + -1.9 495,321 + -0.5 495,321 + -0.2 495,322 - +0.6 495,360 + -0.7 495,385 - ABZR87_RS18415 0.14 -0.7 495,489 + ABZR87_RS18415 0.46 -1.6 495,856 - ABZR87_RS18420 0.18 +0.2 495,856 - ABZR87_RS18420 0.18 +0.2 495,875 + ABZR87_RS18420 0.23 -1.0 495,876 - ABZR87_RS18420 0.23 -1.0 496,130 - ABZR87_RS18420 0.90 -0.9 496,167 + +0.8 496,168 - -2.0 496,168 - -0.3 496,173 + -0.2 496,173 + -0.1 496,195 + +0.3 496,195 + -0.1 496,195 + +1.7 496,195 + +0.7 496,196 - -0.4 496,196 - +0.3 496,253 + +0.8 496,283 + ABZR87_RS18425 0.19 +0.2 496,334 + ABZR87_RS18425 0.36 -0.5 496,334 + ABZR87_RS18425 0.36 -1.9 496,334 + ABZR87_RS18425 0.36 +0.3 496,334 + ABZR87_RS18425 0.36 -0.4 496,335 - ABZR87_RS18425 0.36 -1.9 496,335 - ABZR87_RS18425 0.36 -1.8 496,335 - ABZR87_RS18425 0.36 +0.1 496,335 - ABZR87_RS18425 0.36 +0.4 496,378 + ABZR87_RS18425 0.51 -0.2 496,379 - ABZR87_RS18425 0.52 +0.0 496,379 - ABZR87_RS18425 0.52 -0.1 496,393 + ABZR87_RS18425 0.56 -0.7 496,393 + ABZR87_RS18425 0.56 -1.9 496,393 + ABZR87_RS18425 0.56 -2.8 496,517 + +1.0 496,518 - -0.4 496,518 - +0.4 496,518 - -0.2 496,518 - -1.5 496,518 - +0.2 496,518 - -0.5 496,518 - -1.0 496,525 + -1.7 496,525 + +0.9 496,525 + -0.8 496,525 + -0.0 496,525 + -0.3 496,526 - -0.2 496,608 + -0.3
Or see this region's nucleotide sequence