Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17770 and ABZR87_RS17775 are separated by 22 nucleotides ABZR87_RS17775 and ABZR87_RS17780 are separated by 162 nucleotides
ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668
_RS17770
ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908
_RS17775
ABZR87_RS17780: ABZR87_RS17780 - LysR family transcriptional regulator, at 350,071 to 350,955
_RS17780
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 347.775 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.070 kb on - strand, within ABZR87_RS17770 at 348.219 kb on + strand, within ABZR87_RS17770 at 348.380 kb on - strand, within ABZR87_RS17770 at 348.591 kb on + strand at 348.591 kb on + strand at 348.690 kb on + strand at 348.690 kb on + strand at 348.691 kb on - strand at 348.696 kb on + strand at 348.696 kb on + strand at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 349.153 kb on + strand, within ABZR87_RS17775 at 349.154 kb on - strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.157 kb on - strand, within ABZR87_RS17775 at 349.183 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.858 kb on + strand at 349.858 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.032 kb on - strand at 350.293 kb on + strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.554 kb on + strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.590 kb on + strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 347,775 + ABZR87_RS17770 0.34 +0.8 348,069 + ABZR87_RS17770 0.55 +0.9 348,069 + ABZR87_RS17770 0.55 +0.4 348,070 - ABZR87_RS17770 0.56 -0.1 348,219 + ABZR87_RS17770 0.67 -0.3 348,380 - ABZR87_RS17770 0.79 -2.1 348,591 + -2.2 348,591 + -0.1 348,690 + +0.9 348,690 + +0.0 348,691 - -1.1 348,696 + +0.5 348,696 + -0.7 348,970 + ABZR87_RS17775 0.23 -0.2 348,970 + ABZR87_RS17775 0.23 +0.9 348,970 + ABZR87_RS17775 0.23 +0.2 348,970 + ABZR87_RS17775 0.23 +0.9 348,970 + ABZR87_RS17775 0.23 -0.1 349,153 + ABZR87_RS17775 0.38 +0.4 349,154 - ABZR87_RS17775 0.38 -0.9 349,156 + ABZR87_RS17775 0.38 -0.8 349,156 + ABZR87_RS17775 0.38 -0.5 349,157 - ABZR87_RS17775 0.38 -1.6 349,183 + ABZR87_RS17775 0.40 -1.3 349,465 + ABZR87_RS17775 0.64 -0.1 349,465 + ABZR87_RS17775 0.64 -0.2 349,465 + ABZR87_RS17775 0.64 -0.6 349,466 - ABZR87_RS17775 0.64 +0.5 349,466 - ABZR87_RS17775 0.64 -2.7 349,858 + +0.5 349,858 + +0.5 350,031 + -0.3 350,031 + +2.8 350,031 + -0.4 350,032 - -0.4 350,293 + ABZR87_RS17780 0.25 -0.0 350,294 - ABZR87_RS17780 0.25 +0.6 350,294 - ABZR87_RS17780 0.25 -3.0 350,554 + ABZR87_RS17780 0.55 +1.7 350,555 - ABZR87_RS17780 0.55 -1.8 350,555 - ABZR87_RS17780 0.55 -1.2 350,590 + ABZR87_RS17780 0.59 -0.1 350,591 - ABZR87_RS17780 0.59 -0.3 350,591 - ABZR87_RS17780 0.59 +0.6 350,591 - ABZR87_RS17780 0.59 +0.5
Or see this region's nucleotide sequence