Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17580 and ABZR87_RS17585 are separated by 259 nucleotides ABZR87_RS17585 and ABZR87_RS17590 are separated by 9 nucleotides
ABZR87_RS17580: ABZR87_RS17580 - amino acid permease, at 305,444 to 306,820
_RS17580
ABZR87_RS17585: ABZR87_RS17585 - alpha/beta hydrolase domain-containing protein, at 307,080 to 309,158
_RS17585
ABZR87_RS17590: ABZR87_RS17590 - sensor domain-containing diguanylate cyclase, at 309,168 to 310,685
_RS17590
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.234 kb on + strand, within ABZR87_RS17580 at 306.234 kb on + strand, within ABZR87_RS17580 at 306.273 kb on + strand, within ABZR87_RS17580 at 306.274 kb on - strand, within ABZR87_RS17580 at 306.282 kb on + strand, within ABZR87_RS17580 at 306.339 kb on + strand, within ABZR87_RS17580 at 306.340 kb on - strand, within ABZR87_RS17580 at 306.450 kb on + strand, within ABZR87_RS17580 at 306.450 kb on + strand, within ABZR87_RS17580 at 306.450 kb on + strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.510 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.544 kb on - strand, within ABZR87_RS17580 at 306.544 kb on - strand, within ABZR87_RS17580 at 306.556 kb on - strand, within ABZR87_RS17580 at 306.645 kb on + strand, within ABZR87_RS17580 at 306.645 kb on + strand, within ABZR87_RS17580 at 306.645 kb on + strand, within ABZR87_RS17580 at 306.646 kb on - strand, within ABZR87_RS17580 at 306.942 kb on + strand at 306.942 kb on + strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.986 kb on + strand at 306.987 kb on - strand at 307.033 kb on - strand at 307.033 kb on - strand at 307.197 kb on + strand at 307.197 kb on + strand at 307.198 kb on - strand at 307.198 kb on - strand at 307.239 kb on + strand at 307.240 kb on - strand at 307.240 kb on - strand at 307.257 kb on + strand at 307.281 kb on - strand at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.369 kb on - strand, within ABZR87_RS17585 at 307.369 kb on - strand, within ABZR87_RS17585 at 307.431 kb on + strand, within ABZR87_RS17585 at 307.598 kb on + strand, within ABZR87_RS17585 at 307.598 kb on + strand, within ABZR87_RS17585 at 307.599 kb on - strand, within ABZR87_RS17585 at 307.599 kb on - strand, within ABZR87_RS17585 at 307.723 kb on - strand, within ABZR87_RS17585 at 307.872 kb on + strand, within ABZR87_RS17585 at 307.872 kb on + strand, within ABZR87_RS17585 at 307.872 kb on + strand, within ABZR87_RS17585 at 307.873 kb on - strand, within ABZR87_RS17585 at 307.873 kb on - strand, within ABZR87_RS17585 at 307.873 kb on - strand, within ABZR87_RS17585 at 307.873 kb on - strand, within ABZR87_RS17585 at 307.873 kb on - strand, within ABZR87_RS17585 at 307.878 kb on + strand, within ABZR87_RS17585 at 307.878 kb on + strand, within ABZR87_RS17585 at 307.879 kb on - strand, within ABZR87_RS17585 at 307.879 kb on - strand, within ABZR87_RS17585 at 307.879 kb on - strand, within ABZR87_RS17585 at 307.890 kb on + strand, within ABZR87_RS17585 at 307.891 kb on - strand, within ABZR87_RS17585 at 307.891 kb on - strand, within ABZR87_RS17585 at 307.913 kb on - strand, within ABZR87_RS17585 at 308.016 kb on + strand, within ABZR87_RS17585 at 308.247 kb on + strand, within ABZR87_RS17585 at 308.247 kb on + strand, within ABZR87_RS17585 at 308.248 kb on - strand, within ABZR87_RS17585 at 308.248 kb on - strand, within ABZR87_RS17585 at 308.248 kb on - strand, within ABZR87_RS17585 at 308.427 kb on + strand, within ABZR87_RS17585 at 308.427 kb on + strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.428 kb on - strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.430 kb on + strand, within ABZR87_RS17585 at 308.431 kb on - strand, within ABZR87_RS17585 at 308.431 kb on - strand, within ABZR87_RS17585 at 308.434 kb on - strand, within ABZR87_RS17585 at 308.508 kb on + strand, within ABZR87_RS17585 at 308.508 kb on + strand, within ABZR87_RS17585 at 308.508 kb on + strand, within ABZR87_RS17585 at 308.521 kb on - strand, within ABZR87_RS17585 at 308.521 kb on - strand, within ABZR87_RS17585 at 308.566 kb on + strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.567 kb on - strand, within ABZR87_RS17585 at 308.568 kb on + strand, within ABZR87_RS17585 at 308.568 kb on + strand, within ABZR87_RS17585 at 308.568 kb on + strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.569 kb on - strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.694 kb on + strand, within ABZR87_RS17585 at 308.695 kb on - strand, within ABZR87_RS17585 at 308.715 kb on + strand, within ABZR87_RS17585 at 308.716 kb on - strand, within ABZR87_RS17585 at 308.742 kb on + strand, within ABZR87_RS17585 at 308.742 kb on + strand, within ABZR87_RS17585 at 308.742 kb on + strand, within ABZR87_RS17585 at 308.743 kb on - strand, within ABZR87_RS17585 at 308.790 kb on + strand, within ABZR87_RS17585 at 308.791 kb on - strand, within ABZR87_RS17585 at 308.791 kb on - strand, within ABZR87_RS17585 at 308.791 kb on - strand, within ABZR87_RS17585 at 308.805 kb on + strand, within ABZR87_RS17585 at 308.805 kb on + strand, within ABZR87_RS17585 at 309.027 kb on + strand at 309.045 kb on + strand at 309.046 kb on - strand at 309.046 kb on - strand at 309.046 kb on - strand at 309.156 kb on + strand at 309.156 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.340 kb on + strand, within ABZR87_RS17590 at 309.461 kb on - strand, within ABZR87_RS17590 at 309.551 kb on - strand, within ABZR87_RS17590 at 309.563 kb on - strand, within ABZR87_RS17590 at 309.563 kb on - strand, within ABZR87_RS17590 at 309.563 kb on - strand, within ABZR87_RS17590 at 309.692 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.835 kb on + strand, within ABZR87_RS17590 at 309.836 kb on - strand, within ABZR87_RS17590 at 309.836 kb on - strand, within ABZR87_RS17590 at 309.836 kb on - strand, within ABZR87_RS17590 at 309.888 kb on - strand, within ABZR87_RS17590 at 309.915 kb on - strand, within ABZR87_RS17590 at 309.940 kb on + strand, within ABZR87_RS17590 at 309.940 kb on + strand, within ABZR87_RS17590 at 309.940 kb on + strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 309.941 kb on - strand, within ABZR87_RS17590 at 310.019 kb on - strand, within ABZR87_RS17590
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 306,234 + ABZR87_RS17580 0.57 +0.2 306,234 + ABZR87_RS17580 0.57 -0.2 306,273 + ABZR87_RS17580 0.60 +0.1 306,274 - ABZR87_RS17580 0.60 -0.6 306,282 + ABZR87_RS17580 0.61 -0.4 306,339 + ABZR87_RS17580 0.65 +0.1 306,340 - ABZR87_RS17580 0.65 -0.6 306,450 + ABZR87_RS17580 0.73 -0.6 306,450 + ABZR87_RS17580 0.73 -0.5 306,450 + ABZR87_RS17580 0.73 +0.2 306,451 - ABZR87_RS17580 0.73 +0.1 306,451 - ABZR87_RS17580 0.73 +0.6 306,451 - ABZR87_RS17580 0.73 -1.8 306,451 - ABZR87_RS17580 0.73 +0.0 306,510 + ABZR87_RS17580 0.77 -0.8 306,543 + ABZR87_RS17580 0.80 -0.1 306,543 + ABZR87_RS17580 0.80 -0.0 306,543 + ABZR87_RS17580 0.80 -0.4 306,543 + ABZR87_RS17580 0.80 -0.1 306,544 - ABZR87_RS17580 0.80 -1.4 306,544 - ABZR87_RS17580 0.80 +0.7 306,556 - ABZR87_RS17580 0.81 +1.2 306,645 + ABZR87_RS17580 0.87 -0.6 306,645 + ABZR87_RS17580 0.87 +0.5 306,645 + ABZR87_RS17580 0.87 +0.2 306,646 - ABZR87_RS17580 0.87 +0.4 306,942 + +0.8 306,942 + -0.4 306,943 - -0.2 306,943 - -2.1 306,943 - -0.0 306,943 - -0.6 306,943 - -0.6 306,986 + -2.4 306,987 - -1.5 307,033 - -0.0 307,033 - -0.3 307,197 + -0.3 307,197 + -1.6 307,198 - -0.3 307,198 - -1.4 307,239 + +0.1 307,240 - +1.0 307,240 - -1.6 307,257 + +0.1 307,281 - -0.4 307,368 + ABZR87_RS17585 0.14 -1.0 307,368 + ABZR87_RS17585 0.14 -1.3 307,368 + ABZR87_RS17585 0.14 -0.5 307,368 + ABZR87_RS17585 0.14 +0.4 307,368 + ABZR87_RS17585 0.14 -0.4 307,369 - ABZR87_RS17585 0.14 +0.6 307,369 - ABZR87_RS17585 0.14 +0.8 307,431 + ABZR87_RS17585 0.17 -1.3 307,598 + ABZR87_RS17585 0.25 -0.7 307,598 + ABZR87_RS17585 0.25 +0.6 307,599 - ABZR87_RS17585 0.25 +0.8 307,599 - ABZR87_RS17585 0.25 +0.2 307,723 - ABZR87_RS17585 0.31 -0.1 307,872 + ABZR87_RS17585 0.38 -1.0 307,872 + ABZR87_RS17585 0.38 -0.3 307,872 + ABZR87_RS17585 0.38 +0.1 307,873 - ABZR87_RS17585 0.38 +2.4 307,873 - ABZR87_RS17585 0.38 -0.6 307,873 - ABZR87_RS17585 0.38 +0.5 307,873 - ABZR87_RS17585 0.38 -1.0 307,873 - ABZR87_RS17585 0.38 +1.8 307,878 + ABZR87_RS17585 0.38 -0.7 307,878 + ABZR87_RS17585 0.38 +0.8 307,879 - ABZR87_RS17585 0.38 +0.2 307,879 - ABZR87_RS17585 0.38 -1.4 307,879 - ABZR87_RS17585 0.38 -0.1 307,890 + ABZR87_RS17585 0.39 +0.0 307,891 - ABZR87_RS17585 0.39 -0.5 307,891 - ABZR87_RS17585 0.39 +0.1 307,913 - ABZR87_RS17585 0.40 -0.6 308,016 + ABZR87_RS17585 0.45 +0.6 308,247 + ABZR87_RS17585 0.56 +0.1 308,247 + ABZR87_RS17585 0.56 +0.1 308,248 - ABZR87_RS17585 0.56 -0.8 308,248 - ABZR87_RS17585 0.56 -1.3 308,248 - ABZR87_RS17585 0.56 -1.8 308,427 + ABZR87_RS17585 0.65 -0.3 308,427 + ABZR87_RS17585 0.65 +0.6 308,428 - ABZR87_RS17585 0.65 -2.1 308,428 - ABZR87_RS17585 0.65 -0.1 308,428 - ABZR87_RS17585 0.65 -0.3 308,428 - ABZR87_RS17585 0.65 -1.5 308,430 + ABZR87_RS17585 0.65 +0.2 308,430 + ABZR87_RS17585 0.65 +0.6 308,430 + ABZR87_RS17585 0.65 +0.2 308,430 + ABZR87_RS17585 0.65 -0.1 308,430 + ABZR87_RS17585 0.65 +0.3 308,430 + ABZR87_RS17585 0.65 -1.0 308,431 - ABZR87_RS17585 0.65 +0.6 308,431 - ABZR87_RS17585 0.65 -0.4 308,434 - ABZR87_RS17585 0.65 -0.1 308,508 + ABZR87_RS17585 0.69 -2.3 308,508 + ABZR87_RS17585 0.69 -0.9 308,508 + ABZR87_RS17585 0.69 +0.2 308,521 - ABZR87_RS17585 0.69 -2.3 308,521 - ABZR87_RS17585 0.69 -0.5 308,566 + ABZR87_RS17585 0.71 +0.3 308,567 - ABZR87_RS17585 0.72 -1.4 308,567 - ABZR87_RS17585 0.72 -0.3 308,567 - ABZR87_RS17585 0.72 +0.2 308,567 - ABZR87_RS17585 0.72 -0.7 308,567 - ABZR87_RS17585 0.72 -0.8 308,567 - ABZR87_RS17585 0.72 +0.4 308,567 - ABZR87_RS17585 0.72 -0.0 308,568 + ABZR87_RS17585 0.72 -0.3 308,568 + ABZR87_RS17585 0.72 -1.5 308,568 + ABZR87_RS17585 0.72 -0.8 308,569 - ABZR87_RS17585 0.72 +0.5 308,569 - ABZR87_RS17585 0.72 -0.6 308,569 - ABZR87_RS17585 0.72 -1.2 308,569 - ABZR87_RS17585 0.72 -0.4 308,569 - ABZR87_RS17585 0.72 -0.6 308,694 + ABZR87_RS17585 0.78 +0.3 308,694 + ABZR87_RS17585 0.78 +0.8 308,694 + ABZR87_RS17585 0.78 +0.2 308,694 + ABZR87_RS17585 0.78 -0.6 308,694 + ABZR87_RS17585 0.78 +0.0 308,694 + ABZR87_RS17585 0.78 -0.1 308,694 + ABZR87_RS17585 0.78 -0.1 308,695 - ABZR87_RS17585 0.78 -0.7 308,715 + ABZR87_RS17585 0.79 -2.5 308,716 - ABZR87_RS17585 0.79 +0.6 308,742 + ABZR87_RS17585 0.80 +1.3 308,742 + ABZR87_RS17585 0.80 +0.9 308,742 + ABZR87_RS17585 0.80 -0.4 308,743 - ABZR87_RS17585 0.80 -0.5 308,790 + ABZR87_RS17585 0.82 -0.9 308,791 - ABZR87_RS17585 0.82 -1.2 308,791 - ABZR87_RS17585 0.82 -0.9 308,791 - ABZR87_RS17585 0.82 +0.3 308,805 + ABZR87_RS17585 0.83 +0.1 308,805 + ABZR87_RS17585 0.83 -0.3 309,027 + +0.4 309,045 + +1.9 309,046 - +0.6 309,046 - -2.0 309,046 - +0.5 309,156 + +1.6 309,156 + +1.4 309,238 + -0.5 309,238 + -0.4 309,238 + -0.1 309,238 + +0.9 309,238 + -1.0 309,238 + -0.0 309,238 + -0.2 309,239 - -0.1 309,239 - -0.1 309,239 - +0.4 309,239 - +0.0 309,340 + ABZR87_RS17590 0.11 +0.3 309,461 - ABZR87_RS17590 0.19 -0.2 309,551 - ABZR87_RS17590 0.25 +0.4 309,563 - ABZR87_RS17590 0.26 -1.5 309,563 - ABZR87_RS17590 0.26 -0.7 309,563 - ABZR87_RS17590 0.26 -0.5 309,692 + ABZR87_RS17590 0.35 +0.8 309,835 + ABZR87_RS17590 0.44 -1.0 309,835 + ABZR87_RS17590 0.44 +0.2 309,835 + ABZR87_RS17590 0.44 -1.1 309,835 + ABZR87_RS17590 0.44 -0.1 309,836 - ABZR87_RS17590 0.44 +0.3 309,836 - ABZR87_RS17590 0.44 -0.6 309,836 - ABZR87_RS17590 0.44 +0.2 309,888 - ABZR87_RS17590 0.47 +0.0 309,915 - ABZR87_RS17590 0.49 -0.1 309,940 + ABZR87_RS17590 0.51 -1.4 309,940 + ABZR87_RS17590 0.51 -0.0 309,940 + ABZR87_RS17590 0.51 +1.2 309,941 - ABZR87_RS17590 0.51 +0.3 309,941 - ABZR87_RS17590 0.51 +0.0 309,941 - ABZR87_RS17590 0.51 -0.6 309,941 - ABZR87_RS17590 0.51 -1.3 309,941 - ABZR87_RS17590 0.51 -0.5 310,019 - ABZR87_RS17590 0.56 +0.3
Or see this region's nucleotide sequence