Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16685 and ABZR87_RS16690 are separated by 187 nucleotides ABZR87_RS16690 and ABZR87_RS16695 are separated by 93 nucleotides
ABZR87_RS16685: ABZR87_RS16685 - MFS transporter, at 90,783 to 92,081
_RS16685
ABZR87_RS16690: ABZR87_RS16690 - TetR/AcrR family transcriptional regulator, at 92,269 to 92,946
_RS16690
ABZR87_RS16695: ABZR87_RS16695 - MoxR family ATPase, at 93,040 to 94,002
_RS16695
Position (kb) 92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 91.315 kb on + strand, within ABZR87_RS16685 at 91.316 kb on - strand, within ABZR87_RS16685 at 91.407 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.469 kb on - strand, within ABZR87_RS16685 at 91.469 kb on - strand, within ABZR87_RS16685 at 91.515 kb on + strand, within ABZR87_RS16685 at 91.516 kb on - strand, within ABZR87_RS16685 at 91.516 kb on - strand, within ABZR87_RS16685 at 91.576 kb on + strand, within ABZR87_RS16685 at 91.576 kb on + strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.889 kb on - strand, within ABZR87_RS16685 at 92.041 kb on + strand at 92.042 kb on - strand at 92.042 kb on - strand at 92.136 kb on + strand at 92.175 kb on + strand at 92.178 kb on + strand at 92.178 kb on + strand at 92.179 kb on - strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.358 kb on + strand, within ABZR87_RS16690 at 92.413 kb on + strand, within ABZR87_RS16690 at 92.413 kb on + strand, within ABZR87_RS16690 at 92.414 kb on - strand, within ABZR87_RS16690 at 92.416 kb on + strand, within ABZR87_RS16690 at 92.417 kb on - strand, within ABZR87_RS16690 at 92.417 kb on - strand, within ABZR87_RS16690 at 92.474 kb on - strand, within ABZR87_RS16690 at 92.486 kb on - strand, within ABZR87_RS16690 at 92.524 kb on + strand, within ABZR87_RS16690 at 92.524 kb on + strand, within ABZR87_RS16690 at 92.524 kb on + strand, within ABZR87_RS16690 at 92.557 kb on + strand, within ABZR87_RS16690 at 92.627 kb on + strand, within ABZR87_RS16690 at 92.628 kb on - strand, within ABZR87_RS16690 at 92.836 kb on + strand, within ABZR87_RS16690 at 92.836 kb on + strand, within ABZR87_RS16690 at 92.836 kb on + strand, within ABZR87_RS16690 at 92.839 kb on - strand, within ABZR87_RS16690 at 92.952 kb on + strand at 92.953 kb on - strand at 93.004 kb on + strand at 93.005 kb on - strand at 93.005 kb on - strand at 93.075 kb on + strand at 93.231 kb on - strand, within ABZR87_RS16695 at 93.280 kb on + strand, within ABZR87_RS16695 at 93.280 kb on + strand, within ABZR87_RS16695 at 93.281 kb on - strand, within ABZR87_RS16695 at 93.340 kb on + strand, within ABZR87_RS16695 at 93.341 kb on - strand, within ABZR87_RS16695 at 93.493 kb on + strand, within ABZR87_RS16695 at 93.493 kb on + strand, within ABZR87_RS16695 at 93.494 kb on - strand, within ABZR87_RS16695 at 93.494 kb on - strand, within ABZR87_RS16695 at 93.494 kb on - strand, within ABZR87_RS16695 at 93.640 kb on + strand, within ABZR87_RS16695 at 93.640 kb on + strand, within ABZR87_RS16695 at 93.640 kb on + strand, within ABZR87_RS16695 at 93.641 kb on - strand, within ABZR87_RS16695 at 93.751 kb on + strand, within ABZR87_RS16695 at 93.751 kb on + strand, within ABZR87_RS16695 at 93.751 kb on + strand, within ABZR87_RS16695 at 93.751 kb on + strand, within ABZR87_RS16695 at 93.751 kb on + strand, within ABZR87_RS16695 at 93.752 kb on - strand, within ABZR87_RS16695 at 93.752 kb on - strand, within ABZR87_RS16695 at 93.752 kb on - strand, within ABZR87_RS16695
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 91,315 + ABZR87_RS16685 0.41 +0.6 91,316 - ABZR87_RS16685 0.41 -0.3 91,407 + ABZR87_RS16685 0.48 -0.2 91,468 + ABZR87_RS16685 0.53 +0.4 91,468 + ABZR87_RS16685 0.53 +0.3 91,468 + ABZR87_RS16685 0.53 -0.2 91,468 + ABZR87_RS16685 0.53 +1.8 91,468 + ABZR87_RS16685 0.53 -0.7 91,469 - ABZR87_RS16685 0.53 -0.2 91,469 - ABZR87_RS16685 0.53 +0.9 91,515 + ABZR87_RS16685 0.56 -0.1 91,516 - ABZR87_RS16685 0.56 +0.4 91,516 - ABZR87_RS16685 0.56 +0.3 91,576 + ABZR87_RS16685 0.61 +0.3 91,576 + ABZR87_RS16685 0.61 +0.8 91,577 - ABZR87_RS16685 0.61 +0.6 91,577 - ABZR87_RS16685 0.61 +1.5 91,577 - ABZR87_RS16685 0.61 -0.9 91,577 - ABZR87_RS16685 0.61 -0.8 91,849 + ABZR87_RS16685 0.82 +0.7 91,849 + ABZR87_RS16685 0.82 +0.1 91,849 + ABZR87_RS16685 0.82 +1.1 91,849 + ABZR87_RS16685 0.82 +0.7 91,850 - ABZR87_RS16685 0.82 +0.6 91,850 - ABZR87_RS16685 0.82 -1.2 91,850 - ABZR87_RS16685 0.82 +0.3 91,850 - ABZR87_RS16685 0.82 +0.3 91,889 - ABZR87_RS16685 0.85 +0.6 92,041 + -0.4 92,042 - +0.2 92,042 - +0.1 92,136 + +0.6 92,175 + -0.2 92,178 + +0.2 92,178 + +0.3 92,179 - +0.3 92,262 + +0.1 92,262 + -2.1 92,262 + +0.2 92,262 + -0.7 92,262 + +0.7 92,263 - -0.9 92,263 - -0.6 92,263 - -0.2 92,263 - +0.3 92,263 - -0.3 92,263 - +0.6 92,358 + ABZR87_RS16690 0.13 +0.1 92,413 + ABZR87_RS16690 0.21 +1.0 92,413 + ABZR87_RS16690 0.21 +0.5 92,414 - ABZR87_RS16690 0.21 +0.0 92,416 + ABZR87_RS16690 0.22 -0.2 92,417 - ABZR87_RS16690 0.22 -0.6 92,417 - ABZR87_RS16690 0.22 -0.6 92,474 - ABZR87_RS16690 0.30 +0.7 92,486 - ABZR87_RS16690 0.32 +1.4 92,524 + ABZR87_RS16690 0.38 +0.9 92,524 + ABZR87_RS16690 0.38 -0.7 92,524 + ABZR87_RS16690 0.38 +1.6 92,557 + ABZR87_RS16690 0.42 +0.6 92,627 + ABZR87_RS16690 0.53 -0.0 92,628 - ABZR87_RS16690 0.53 -0.1 92,836 + ABZR87_RS16690 0.84 -0.3 92,836 + ABZR87_RS16690 0.84 +0.4 92,836 + ABZR87_RS16690 0.84 +0.7 92,839 - ABZR87_RS16690 0.84 +0.2 92,952 + +1.6 92,953 - -2.3 93,004 + -1.4 93,005 - -0.5 93,005 - -0.2 93,075 + +0.5 93,231 - ABZR87_RS16695 0.20 -0.4 93,280 + ABZR87_RS16695 0.25 -0.1 93,280 + ABZR87_RS16695 0.25 -0.3 93,281 - ABZR87_RS16695 0.25 -0.1 93,340 + ABZR87_RS16695 0.31 -0.3 93,341 - ABZR87_RS16695 0.31 -0.1 93,493 + ABZR87_RS16695 0.47 +0.3 93,493 + ABZR87_RS16695 0.47 +0.0 93,494 - ABZR87_RS16695 0.47 -0.2 93,494 - ABZR87_RS16695 0.47 -0.7 93,494 - ABZR87_RS16695 0.47 -0.7 93,640 + ABZR87_RS16695 0.62 +0.9 93,640 + ABZR87_RS16695 0.62 +0.0 93,640 + ABZR87_RS16695 0.62 -0.5 93,641 - ABZR87_RS16695 0.62 -0.8 93,751 + ABZR87_RS16695 0.74 -1.8 93,751 + ABZR87_RS16695 0.74 -1.2 93,751 + ABZR87_RS16695 0.74 -0.4 93,751 + ABZR87_RS16695 0.74 +0.6 93,751 + ABZR87_RS16695 0.74 +0.3 93,752 - ABZR87_RS16695 0.74 -0.1 93,752 - ABZR87_RS16695 0.74 -0.4 93,752 - ABZR87_RS16695 0.74 -2.3
Or see this region's nucleotide sequence