Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16685

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16675 and ABZR87_RS16680 are separated by 107 nucleotidesABZR87_RS16680 and ABZR87_RS16685 are separated by 4 nucleotidesABZR87_RS16685 and ABZR87_RS16690 are separated by 187 nucleotidesABZR87_RS16690 and ABZR87_RS16695 are separated by 93 nucleotides ABZR87_RS16675: ABZR87_RS16675 - LysR family transcriptional regulator, at 89,019 to 89,897 _RS16675 ABZR87_RS16680: ABZR87_RS16680 - molybdate ABC transporter substrate-binding protein, at 90,005 to 90,778 _RS16680 ABZR87_RS16685: ABZR87_RS16685 - MFS transporter, at 90,783 to 92,081 _RS16685 ABZR87_RS16690: ABZR87_RS16690 - TetR/AcrR family transcriptional regulator, at 92,269 to 92,946 _RS16690 ABZR87_RS16695: ABZR87_RS16695 - MoxR family ATPase, at 93,040 to 94,002 _RS16695 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 89.920 kb on + strandat 89.955 kb on - strandat 89.956 kb on + strandat 89.969 kb on - strandat 89.972 kb on - strandat 90.155 kb on + strand, within ABZR87_RS16680at 90.155 kb on + strand, within ABZR87_RS16680at 90.155 kb on + strand, within ABZR87_RS16680at 90.156 kb on - strand, within ABZR87_RS16680at 90.190 kb on + strand, within ABZR87_RS16680at 90.191 kb on - strand, within ABZR87_RS16680at 90.191 kb on - strand, within ABZR87_RS16680at 90.458 kb on + strand, within ABZR87_RS16680at 90.459 kb on - strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.548 kb on + strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.549 kb on - strand, within ABZR87_RS16680at 90.659 kb on + strand, within ABZR87_RS16680at 90.660 kb on - strand, within ABZR87_RS16680at 90.719 kb on + strandat 90.719 kb on + strandat 90.719 kb on + strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.720 kb on - strandat 90.754 kb on + strandat 90.754 kb on + strandat 90.758 kb on + strandat 90.758 kb on + strandat 90.758 kb on + strandat 90.758 kb on + strandat 90.759 kb on - strandat 90.759 kb on - strandat 90.901 kb on + strandat 90.901 kb on + strandat 90.901 kb on + strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 90.902 kb on - strandat 91.069 kb on + strand, within ABZR87_RS16685at 91.069 kb on + strand, within ABZR87_RS16685at 91.069 kb on + strand, within ABZR87_RS16685at 91.070 kb on - strand, within ABZR87_RS16685at 91.070 kb on - strand, within ABZR87_RS16685at 91.070 kb on - strand, within ABZR87_RS16685at 91.117 kb on + strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.118 kb on - strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.126 kb on + strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.127 kb on - strand, within ABZR87_RS16685at 91.153 kb on + strand, within ABZR87_RS16685at 91.153 kb on + strand, within ABZR87_RS16685at 91.154 kb on - strand, within ABZR87_RS16685at 91.154 kb on - strand, within ABZR87_RS16685at 91.156 kb on + strand, within ABZR87_RS16685at 91.157 kb on - strand, within ABZR87_RS16685at 91.157 kb on - strand, within ABZR87_RS16685at 91.183 kb on + strand, within ABZR87_RS16685at 91.183 kb on + strand, within ABZR87_RS16685at 91.184 kb on - strand, within ABZR87_RS16685at 91.215 kb on - strand, within ABZR87_RS16685at 91.315 kb on + strand, within ABZR87_RS16685at 91.316 kb on - strand, within ABZR87_RS16685at 91.407 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.468 kb on + strand, within ABZR87_RS16685at 91.469 kb on - strand, within ABZR87_RS16685at 91.469 kb on - strand, within ABZR87_RS16685at 91.515 kb on + strand, within ABZR87_RS16685at 91.516 kb on - strand, within ABZR87_RS16685at 91.516 kb on - strand, within ABZR87_RS16685at 91.576 kb on + strand, within ABZR87_RS16685at 91.576 kb on + strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.577 kb on - strand, within ABZR87_RS16685at 91.849 kb on + strand, within ABZR87_RS16685at 91.849 kb on + strand, within ABZR87_RS16685at 91.849 kb on + strand, within ABZR87_RS16685at 91.849 kb on + strand, within ABZR87_RS16685at 91.850 kb on - strand, within ABZR87_RS16685at 91.850 kb on - strand, within ABZR87_RS16685at 91.850 kb on - strand, within ABZR87_RS16685at 91.850 kb on - strand, within ABZR87_RS16685at 91.889 kb on - strand, within ABZR87_RS16685at 92.041 kb on + strandat 92.042 kb on - strandat 92.042 kb on - strandat 92.136 kb on + strandat 92.175 kb on + strandat 92.178 kb on + strandat 92.178 kb on + strandat 92.179 kb on - strandat 92.262 kb on + strandat 92.262 kb on + strandat 92.262 kb on + strandat 92.262 kb on + strandat 92.262 kb on + strandat 92.263 kb on - strandat 92.263 kb on - strandat 92.263 kb on - strandat 92.263 kb on - strandat 92.263 kb on - strandat 92.263 kb on - strandat 92.358 kb on + strand, within ABZR87_RS16690at 92.413 kb on + strand, within ABZR87_RS16690at 92.413 kb on + strand, within ABZR87_RS16690at 92.414 kb on - strand, within ABZR87_RS16690at 92.416 kb on + strand, within ABZR87_RS16690at 92.417 kb on - strand, within ABZR87_RS16690at 92.417 kb on - strand, within ABZR87_RS16690at 92.474 kb on - strand, within ABZR87_RS16690at 92.486 kb on - strand, within ABZR87_RS16690at 92.524 kb on + strand, within ABZR87_RS16690at 92.524 kb on + strand, within ABZR87_RS16690at 92.524 kb on + strand, within ABZR87_RS16690at 92.557 kb on + strand, within ABZR87_RS16690at 92.627 kb on + strand, within ABZR87_RS16690at 92.628 kb on - strand, within ABZR87_RS16690at 92.836 kb on + strand, within ABZR87_RS16690at 92.836 kb on + strand, within ABZR87_RS16690at 92.836 kb on + strand, within ABZR87_RS16690at 92.839 kb on - strand, within ABZR87_RS16690at 92.952 kb on + strandat 92.953 kb on - strandat 93.004 kb on + strandat 93.005 kb on - strandat 93.005 kb on - strandat 93.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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89,920 + -1.2
89,955 - -0.6
89,956 + -0.0
89,969 - -0.5
89,972 - +0.1
90,155 + ABZR87_RS16680 0.19 -0.8
90,155 + ABZR87_RS16680 0.19 +1.0
90,155 + ABZR87_RS16680 0.19 +0.6
90,156 - ABZR87_RS16680 0.20 -0.2
90,190 + ABZR87_RS16680 0.24 +1.0
90,191 - ABZR87_RS16680 0.24 -0.5
90,191 - ABZR87_RS16680 0.24 +0.0
90,458 + ABZR87_RS16680 0.59 +0.4
90,459 - ABZR87_RS16680 0.59 +0.9
90,548 + ABZR87_RS16680 0.70 +0.4
90,548 + ABZR87_RS16680 0.70 +0.9
90,548 + ABZR87_RS16680 0.70 -0.6
90,548 + ABZR87_RS16680 0.70 -0.3
90,548 + ABZR87_RS16680 0.70 +1.3
90,549 - ABZR87_RS16680 0.70 +0.3
90,549 - ABZR87_RS16680 0.70 +0.4
90,549 - ABZR87_RS16680 0.70 -0.7
90,549 - ABZR87_RS16680 0.70 -0.2
90,549 - ABZR87_RS16680 0.70 -0.4
90,549 - ABZR87_RS16680 0.70 +2.1
90,659 + ABZR87_RS16680 0.84 +0.4
90,660 - ABZR87_RS16680 0.85 +0.4
90,719 + -0.5
90,719 + +0.6
90,719 + -0.1
90,720 - +0.9
90,720 - -1.4
90,720 - +1.0
90,720 - +0.5
90,720 - +0.6
90,754 + +1.1
90,754 + +0.8
90,758 + -0.6
90,758 + +0.3
90,758 + -1.0
90,758 + +1.6
90,759 - -1.9
90,759 - -0.2
90,901 + -0.4
90,901 + +0.3
90,901 + +0.3
90,902 - +0.1
90,902 - +1.0
90,902 - -0.6
90,902 - +0.1
90,902 - +0.7
90,902 - +0.2
91,069 + ABZR87_RS16685 0.22 +0.4
91,069 + ABZR87_RS16685 0.22 +1.5
91,069 + ABZR87_RS16685 0.22 +0.4
91,070 - ABZR87_RS16685 0.22 +0.5
91,070 - ABZR87_RS16685 0.22 -0.7
91,070 - ABZR87_RS16685 0.22 -0.2
91,117 + ABZR87_RS16685 0.26 +0.2
91,118 - ABZR87_RS16685 0.26 +0.6
91,118 - ABZR87_RS16685 0.26 -0.2
91,118 - ABZR87_RS16685 0.26 +1.0
91,118 - ABZR87_RS16685 0.26 +0.3
91,118 - ABZR87_RS16685 0.26 +0.8
91,126 + ABZR87_RS16685 0.26 +0.4
91,126 + ABZR87_RS16685 0.26 -0.0
91,126 + ABZR87_RS16685 0.26 -1.0
91,126 + ABZR87_RS16685 0.26 -0.1
91,127 - ABZR87_RS16685 0.26 +0.7
91,127 - ABZR87_RS16685 0.26 +1.8
91,127 - ABZR87_RS16685 0.26 -0.2
91,127 - ABZR87_RS16685 0.26 +0.1
91,127 - ABZR87_RS16685 0.26 -0.1
91,153 + ABZR87_RS16685 0.28 +0.2
91,153 + ABZR87_RS16685 0.28 +0.9
91,154 - ABZR87_RS16685 0.29 -0.4
91,154 - ABZR87_RS16685 0.29 +0.7
91,156 + ABZR87_RS16685 0.29 +0.0
91,157 - ABZR87_RS16685 0.29 -0.2
91,157 - ABZR87_RS16685 0.29 -0.6
91,183 + ABZR87_RS16685 0.31 -0.8
91,183 + ABZR87_RS16685 0.31 +1.1
91,184 - ABZR87_RS16685 0.31 -0.5
91,215 - ABZR87_RS16685 0.33 -1.0
91,315 + ABZR87_RS16685 0.41 +0.6
91,316 - ABZR87_RS16685 0.41 -0.3
91,407 + ABZR87_RS16685 0.48 -0.2
91,468 + ABZR87_RS16685 0.53 +0.4
91,468 + ABZR87_RS16685 0.53 +0.3
91,468 + ABZR87_RS16685 0.53 -0.2
91,468 + ABZR87_RS16685 0.53 +1.8
91,468 + ABZR87_RS16685 0.53 -0.7
91,469 - ABZR87_RS16685 0.53 -0.2
91,469 - ABZR87_RS16685 0.53 +0.9
91,515 + ABZR87_RS16685 0.56 -0.1
91,516 - ABZR87_RS16685 0.56 +0.4
91,516 - ABZR87_RS16685 0.56 +0.3
91,576 + ABZR87_RS16685 0.61 +0.3
91,576 + ABZR87_RS16685 0.61 +0.8
91,577 - ABZR87_RS16685 0.61 +0.6
91,577 - ABZR87_RS16685 0.61 +1.5
91,577 - ABZR87_RS16685 0.61 -0.9
91,577 - ABZR87_RS16685 0.61 -0.8
91,849 + ABZR87_RS16685 0.82 +0.7
91,849 + ABZR87_RS16685 0.82 +0.1
91,849 + ABZR87_RS16685 0.82 +1.1
91,849 + ABZR87_RS16685 0.82 +0.7
91,850 - ABZR87_RS16685 0.82 +0.6
91,850 - ABZR87_RS16685 0.82 -1.2
91,850 - ABZR87_RS16685 0.82 +0.3
91,850 - ABZR87_RS16685 0.82 +0.3
91,889 - ABZR87_RS16685 0.85 +0.6
92,041 + -0.4
92,042 - +0.2
92,042 - +0.1
92,136 + +0.6
92,175 + -0.2
92,178 + +0.2
92,178 + +0.3
92,179 - +0.3
92,262 + +0.1
92,262 + -2.1
92,262 + +0.2
92,262 + -0.7
92,262 + +0.7
92,263 - -0.9
92,263 - -0.6
92,263 - -0.2
92,263 - +0.3
92,263 - -0.3
92,263 - +0.6
92,358 + ABZR87_RS16690 0.13 +0.1
92,413 + ABZR87_RS16690 0.21 +1.0
92,413 + ABZR87_RS16690 0.21 +0.5
92,414 - ABZR87_RS16690 0.21 +0.0
92,416 + ABZR87_RS16690 0.22 -0.2
92,417 - ABZR87_RS16690 0.22 -0.6
92,417 - ABZR87_RS16690 0.22 -0.6
92,474 - ABZR87_RS16690 0.30 +0.7
92,486 - ABZR87_RS16690 0.32 +1.4
92,524 + ABZR87_RS16690 0.38 +0.9
92,524 + ABZR87_RS16690 0.38 -0.7
92,524 + ABZR87_RS16690 0.38 +1.6
92,557 + ABZR87_RS16690 0.42 +0.6
92,627 + ABZR87_RS16690 0.53 -0.0
92,628 - ABZR87_RS16690 0.53 -0.1
92,836 + ABZR87_RS16690 0.84 -0.3
92,836 + ABZR87_RS16690 0.84 +0.4
92,836 + ABZR87_RS16690 0.84 +0.7
92,839 - ABZR87_RS16690 0.84 +0.2
92,952 + +1.6
92,953 - -2.3
93,004 + -1.4
93,005 - -0.5
93,005 - -0.2
93,075 + +0.5

Or see this region's nucleotide sequence