Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16675 and ABZR87_RS16680 are separated by 107 nucleotides ABZR87_RS16680 and ABZR87_RS16685 are separated by 4 nucleotides
ABZR87_RS16675: ABZR87_RS16675 - LysR family transcriptional regulator, at 89,019 to 89,897
_RS16675
ABZR87_RS16680: ABZR87_RS16680 - molybdate ABC transporter substrate-binding protein, at 90,005 to 90,778
_RS16680
ABZR87_RS16685: ABZR87_RS16685 - MFS transporter, at 90,783 to 92,081
_RS16685
Position (kb) 90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.204 kb on + strand, within ABZR87_RS16675 at 89.204 kb on + strand, within ABZR87_RS16675 at 89.204 kb on + strand, within ABZR87_RS16675 at 89.205 kb on - strand, within ABZR87_RS16675 at 89.238 kb on + strand, within ABZR87_RS16675 at 89.238 kb on + strand, within ABZR87_RS16675 at 89.238 kb on + strand, within ABZR87_RS16675 at 89.239 kb on - strand, within ABZR87_RS16675 at 89.239 kb on - strand, within ABZR87_RS16675 at 89.239 kb on - strand, within ABZR87_RS16675 at 89.239 kb on - strand, within ABZR87_RS16675 at 89.239 kb on - strand, within ABZR87_RS16675 at 89.239 kb on - strand, within ABZR87_RS16675 at 89.584 kb on - strand, within ABZR87_RS16675 at 89.584 kb on - strand, within ABZR87_RS16675 at 89.656 kb on + strand, within ABZR87_RS16675 at 89.656 kb on + strand, within ABZR87_RS16675 at 89.657 kb on - strand, within ABZR87_RS16675 at 89.657 kb on - strand, within ABZR87_RS16675 at 89.657 kb on - strand, within ABZR87_RS16675 at 89.657 kb on - strand, within ABZR87_RS16675 at 89.657 kb on - strand, within ABZR87_RS16675 at 89.657 kb on - strand, within ABZR87_RS16675 at 89.920 kb on + strand at 89.955 kb on - strand at 89.956 kb on + strand at 89.969 kb on - strand at 89.972 kb on - strand at 90.155 kb on + strand, within ABZR87_RS16680 at 90.155 kb on + strand, within ABZR87_RS16680 at 90.155 kb on + strand, within ABZR87_RS16680 at 90.156 kb on - strand, within ABZR87_RS16680 at 90.190 kb on + strand, within ABZR87_RS16680 at 90.191 kb on - strand, within ABZR87_RS16680 at 90.191 kb on - strand, within ABZR87_RS16680 at 90.458 kb on + strand, within ABZR87_RS16680 at 90.459 kb on - strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.659 kb on + strand, within ABZR87_RS16680 at 90.660 kb on - strand, within ABZR87_RS16680 at 90.719 kb on + strand at 90.719 kb on + strand at 90.719 kb on + strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.754 kb on + strand at 90.754 kb on + strand at 90.758 kb on + strand at 90.758 kb on + strand at 90.758 kb on + strand at 90.758 kb on + strand at 90.759 kb on - strand at 90.759 kb on - strand at 90.901 kb on + strand at 90.901 kb on + strand at 90.901 kb on + strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 91.069 kb on + strand, within ABZR87_RS16685 at 91.069 kb on + strand, within ABZR87_RS16685 at 91.069 kb on + strand, within ABZR87_RS16685 at 91.070 kb on - strand, within ABZR87_RS16685 at 91.070 kb on - strand, within ABZR87_RS16685 at 91.070 kb on - strand, within ABZR87_RS16685 at 91.117 kb on + strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.153 kb on + strand, within ABZR87_RS16685 at 91.153 kb on + strand, within ABZR87_RS16685 at 91.154 kb on - strand, within ABZR87_RS16685 at 91.154 kb on - strand, within ABZR87_RS16685 at 91.156 kb on + strand, within ABZR87_RS16685 at 91.157 kb on - strand, within ABZR87_RS16685 at 91.157 kb on - strand, within ABZR87_RS16685 at 91.183 kb on + strand, within ABZR87_RS16685 at 91.183 kb on + strand, within ABZR87_RS16685 at 91.184 kb on - strand, within ABZR87_RS16685 at 91.215 kb on - strand, within ABZR87_RS16685 at 91.315 kb on + strand, within ABZR87_RS16685 at 91.316 kb on - strand, within ABZR87_RS16685 at 91.407 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.469 kb on - strand, within ABZR87_RS16685 at 91.469 kb on - strand, within ABZR87_RS16685 at 91.515 kb on + strand, within ABZR87_RS16685 at 91.516 kb on - strand, within ABZR87_RS16685 at 91.516 kb on - strand, within ABZR87_RS16685 at 91.576 kb on + strand, within ABZR87_RS16685 at 91.576 kb on + strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 89,204 + ABZR87_RS16675 0.21 +0.1 89,204 + ABZR87_RS16675 0.21 +0.0 89,204 + ABZR87_RS16675 0.21 +0.9 89,205 - ABZR87_RS16675 0.21 +1.1 89,238 + ABZR87_RS16675 0.25 +0.9 89,238 + ABZR87_RS16675 0.25 -0.2 89,238 + ABZR87_RS16675 0.25 -0.3 89,239 - ABZR87_RS16675 0.25 -0.8 89,239 - ABZR87_RS16675 0.25 -0.3 89,239 - ABZR87_RS16675 0.25 -0.7 89,239 - ABZR87_RS16675 0.25 +0.5 89,239 - ABZR87_RS16675 0.25 +0.2 89,239 - ABZR87_RS16675 0.25 +1.6 89,584 - ABZR87_RS16675 0.64 -0.1 89,584 - ABZR87_RS16675 0.64 -0.6 89,656 + ABZR87_RS16675 0.72 -0.1 89,656 + ABZR87_RS16675 0.72 +0.5 89,657 - ABZR87_RS16675 0.73 +0.2 89,657 - ABZR87_RS16675 0.73 +0.2 89,657 - ABZR87_RS16675 0.73 -1.5 89,657 - ABZR87_RS16675 0.73 +0.9 89,657 - ABZR87_RS16675 0.73 +1.7 89,657 - ABZR87_RS16675 0.73 -0.1 89,920 + -1.2 89,955 - -0.6 89,956 + -0.0 89,969 - -0.5 89,972 - +0.1 90,155 + ABZR87_RS16680 0.19 -0.8 90,155 + ABZR87_RS16680 0.19 +1.0 90,155 + ABZR87_RS16680 0.19 +0.6 90,156 - ABZR87_RS16680 0.20 -0.2 90,190 + ABZR87_RS16680 0.24 +1.0 90,191 - ABZR87_RS16680 0.24 -0.5 90,191 - ABZR87_RS16680 0.24 +0.0 90,458 + ABZR87_RS16680 0.59 +0.4 90,459 - ABZR87_RS16680 0.59 +0.9 90,548 + ABZR87_RS16680 0.70 +0.4 90,548 + ABZR87_RS16680 0.70 +0.9 90,548 + ABZR87_RS16680 0.70 -0.6 90,548 + ABZR87_RS16680 0.70 -0.3 90,548 + ABZR87_RS16680 0.70 +1.3 90,549 - ABZR87_RS16680 0.70 +0.3 90,549 - ABZR87_RS16680 0.70 +0.4 90,549 - ABZR87_RS16680 0.70 -0.7 90,549 - ABZR87_RS16680 0.70 -0.2 90,549 - ABZR87_RS16680 0.70 -0.4 90,549 - ABZR87_RS16680 0.70 +2.1 90,659 + ABZR87_RS16680 0.84 +0.4 90,660 - ABZR87_RS16680 0.85 +0.4 90,719 + -0.5 90,719 + +0.6 90,719 + -0.1 90,720 - +0.9 90,720 - -1.4 90,720 - +1.0 90,720 - +0.5 90,720 - +0.6 90,754 + +1.1 90,754 + +0.8 90,758 + -0.6 90,758 + +0.3 90,758 + -1.0 90,758 + +1.6 90,759 - -1.9 90,759 - -0.2 90,901 + -0.4 90,901 + +0.3 90,901 + +0.3 90,902 - +0.1 90,902 - +1.0 90,902 - -0.6 90,902 - +0.1 90,902 - +0.7 90,902 - +0.2 91,069 + ABZR87_RS16685 0.22 +0.4 91,069 + ABZR87_RS16685 0.22 +1.5 91,069 + ABZR87_RS16685 0.22 +0.4 91,070 - ABZR87_RS16685 0.22 +0.5 91,070 - ABZR87_RS16685 0.22 -0.7 91,070 - ABZR87_RS16685 0.22 -0.2 91,117 + ABZR87_RS16685 0.26 +0.2 91,118 - ABZR87_RS16685 0.26 +0.6 91,118 - ABZR87_RS16685 0.26 -0.2 91,118 - ABZR87_RS16685 0.26 +1.0 91,118 - ABZR87_RS16685 0.26 +0.3 91,118 - ABZR87_RS16685 0.26 +0.8 91,126 + ABZR87_RS16685 0.26 +0.4 91,126 + ABZR87_RS16685 0.26 -0.0 91,126 + ABZR87_RS16685 0.26 -1.0 91,126 + ABZR87_RS16685 0.26 -0.1 91,127 - ABZR87_RS16685 0.26 +0.7 91,127 - ABZR87_RS16685 0.26 +1.8 91,127 - ABZR87_RS16685 0.26 -0.2 91,127 - ABZR87_RS16685 0.26 +0.1 91,127 - ABZR87_RS16685 0.26 -0.1 91,153 + ABZR87_RS16685 0.28 +0.2 91,153 + ABZR87_RS16685 0.28 +0.9 91,154 - ABZR87_RS16685 0.29 -0.4 91,154 - ABZR87_RS16685 0.29 +0.7 91,156 + ABZR87_RS16685 0.29 +0.0 91,157 - ABZR87_RS16685 0.29 -0.2 91,157 - ABZR87_RS16685 0.29 -0.6 91,183 + ABZR87_RS16685 0.31 -0.8 91,183 + ABZR87_RS16685 0.31 +1.1 91,184 - ABZR87_RS16685 0.31 -0.5 91,215 - ABZR87_RS16685 0.33 -1.0 91,315 + ABZR87_RS16685 0.41 +0.6 91,316 - ABZR87_RS16685 0.41 -0.3 91,407 + ABZR87_RS16685 0.48 -0.2 91,468 + ABZR87_RS16685 0.53 +0.4 91,468 + ABZR87_RS16685 0.53 +0.3 91,468 + ABZR87_RS16685 0.53 -0.2 91,468 + ABZR87_RS16685 0.53 +1.8 91,468 + ABZR87_RS16685 0.53 -0.7 91,469 - ABZR87_RS16685 0.53 -0.2 91,469 - ABZR87_RS16685 0.53 +0.9 91,515 + ABZR87_RS16685 0.56 -0.1 91,516 - ABZR87_RS16685 0.56 +0.4 91,516 - ABZR87_RS16685 0.56 +0.3 91,576 + ABZR87_RS16685 0.61 +0.3 91,576 + ABZR87_RS16685 0.61 +0.8 91,577 - ABZR87_RS16685 0.61 +0.6 91,577 - ABZR87_RS16685 0.61 +1.5 91,577 - ABZR87_RS16685 0.61 -0.9 91,577 - ABZR87_RS16685 0.61 -0.8
Or see this region's nucleotide sequence