Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16630

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16625 and ABZR87_RS16630 are separated by 280 nucleotidesABZR87_RS16630 and ABZR87_RS16635 are separated by 90 nucleotides ABZR87_RS16625: ABZR87_RS16625 - methyl-accepting chemotaxis protein, at 77,990 to 79,609 _RS16625 ABZR87_RS16630: ABZR87_RS16630 - 2-oxoglutarate dehydrogenase E1 component, at 79,890 to 82,463 _RS16630 ABZR87_RS16635: ABZR87_RS16635 - MFS family transporter, at 82,554 to 83,858 _RS16635 Position (kb) 79 80 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 79.716 kb on - strandat 79.716 kb on - strandat 79.853 kb on + strandat 79.853 kb on + strandat 79.853 kb on + strandat 79.853 kb on + strandat 79.853 kb on + strandat 79.854 kb on - strandat 79.854 kb on - strandat 79.949 kb on + strandat 79.950 kb on - strandat 79.993 kb on - strandat 80.176 kb on - strand, within ABZR87_RS16630at 80.238 kb on + strand, within ABZR87_RS16630at 80.487 kb on - strand, within ABZR87_RS16630at 80.487 kb on - strand, within ABZR87_RS16630at 80.580 kb on + strand, within ABZR87_RS16630at 80.581 kb on - strand, within ABZR87_RS16630at 80.581 kb on - strand, within ABZR87_RS16630at 80.581 kb on - strand, within ABZR87_RS16630at 80.581 kb on - strand, within ABZR87_RS16630at 80.670 kb on + strand, within ABZR87_RS16630at 80.671 kb on - strand, within ABZR87_RS16630at 80.814 kb on + strand, within ABZR87_RS16630at 80.865 kb on - strand, within ABZR87_RS16630at 80.865 kb on - strand, within ABZR87_RS16630at 80.865 kb on - strand, within ABZR87_RS16630at 80.865 kb on - strand, within ABZR87_RS16630at 80.902 kb on - strand, within ABZR87_RS16630at 80.902 kb on - strand, within ABZR87_RS16630at 81.000 kb on + strand, within ABZR87_RS16630at 81.001 kb on - strand, within ABZR87_RS16630at 81.001 kb on - strand, within ABZR87_RS16630at 81.141 kb on + strand, within ABZR87_RS16630at 81.142 kb on - strand, within ABZR87_RS16630at 81.142 kb on - strand, within ABZR87_RS16630at 81.142 kb on - strand, within ABZR87_RS16630at 81.142 kb on - strand, within ABZR87_RS16630at 81.307 kb on + strand, within ABZR87_RS16630at 81.307 kb on + strand, within ABZR87_RS16630at 81.308 kb on - strand, within ABZR87_RS16630at 81.326 kb on + strand, within ABZR87_RS16630at 81.570 kb on + strand, within ABZR87_RS16630at 81.666 kb on + strand, within ABZR87_RS16630at 81.666 kb on + strand, within ABZR87_RS16630at 81.667 kb on - strand, within ABZR87_RS16630at 81.667 kb on - strand, within ABZR87_RS16630at 81.753 kb on + strand, within ABZR87_RS16630at 81.754 kb on - strand, within ABZR87_RS16630at 81.754 kb on - strand, within ABZR87_RS16630at 81.771 kb on + strand, within ABZR87_RS16630at 81.771 kb on + strand, within ABZR87_RS16630at 81.772 kb on - strand, within ABZR87_RS16630at 81.772 kb on - strand, within ABZR87_RS16630at 81.772 kb on - strand, within ABZR87_RS16630at 82.100 kb on + strand, within ABZR87_RS16630at 82.134 kb on + strand, within ABZR87_RS16630at 82.170 kb on - strand, within ABZR87_RS16630at 82.203 kb on + strand, within ABZR87_RS16630at 82.204 kb on - strand, within ABZR87_RS16630at 82.204 kb on - strand, within ABZR87_RS16630at 82.363 kb on + strandat 82.363 kb on + strandat 82.363 kb on + strandat 82.364 kb on - strandat 82.364 kb on - strandat 82.523 kb on - strandat 82.573 kb on + strandat 82.573 kb on + strandat 82.574 kb on - strandat 82.574 kb on - strandat 82.574 kb on - strandat 82.603 kb on + strandat 82.603 kb on + strandat 82.603 kb on + strandat 82.603 kb on + strandat 82.604 kb on - strandat 82.604 kb on - strandat 82.642 kb on + strandat 82.643 kb on - strandat 82.648 kb on + strandat 82.648 kb on + strandat 82.648 kb on + strandat 82.649 kb on - strandat 82.649 kb on - strandat 82.649 kb on - strandat 82.693 kb on + strand, within ABZR87_RS16635at 82.693 kb on + strand, within ABZR87_RS16635at 82.694 kb on - strand, within ABZR87_RS16635at 82.806 kb on - strand, within ABZR87_RS16635at 82.806 kb on - strand, within ABZR87_RS16635at 82.807 kb on + strand, within ABZR87_RS16635at 82.807 kb on + strand, within ABZR87_RS16635at 82.807 kb on + strand, within ABZR87_RS16635at 82.807 kb on + strand, within ABZR87_RS16635at 82.807 kb on + strand, within ABZR87_RS16635at 82.808 kb on - strand, within ABZR87_RS16635at 82.808 kb on - strand, within ABZR87_RS16635at 82.971 kb on + strand, within ABZR87_RS16635at 82.972 kb on - strand, within ABZR87_RS16635at 82.972 kb on - strand, within ABZR87_RS16635at 82.990 kb on + strand, within ABZR87_RS16635at 82.990 kb on + strand, within ABZR87_RS16635at 82.990 kb on + strand, within ABZR87_RS16635at 82.991 kb on - strand, within ABZR87_RS16635at 82.991 kb on - strand, within ABZR87_RS16635at 82.991 kb on - strand, within ABZR87_RS16635at 82.991 kb on - strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.059 kb on + strand, within ABZR87_RS16635at 83.060 kb on - strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.071 kb on + strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.072 kb on - strand, within ABZR87_RS16635at 83.086 kb on + strand, within ABZR87_RS16635at 83.086 kb on + strand, within ABZR87_RS16635at 83.087 kb on - strand, within ABZR87_RS16635at 83.087 kb on - strand, within ABZR87_RS16635at 83.112 kb on - strand, within ABZR87_RS16635at 83.227 kb on + strand, within ABZR87_RS16635at 83.228 kb on - strand, within ABZR87_RS16635at 83.228 kb on - strand, within ABZR87_RS16635at 83.228 kb on - strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.368 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.422 kb on + strand, within ABZR87_RS16635at 83.423 kb on - strand, within ABZR87_RS16635at 83.423 kb on - strand, within ABZR87_RS16635at 83.423 kb on - strand, within ABZR87_RS16635at 83.441 kb on - strand, within ABZR87_RS16635

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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79,716 - -0.7
79,716 - -0.0
79,853 + -1.1
79,853 + +0.3
79,853 + -0.8
79,853 + +0.3
79,853 + -0.6
79,854 - -0.4
79,854 - -0.1
79,949 + -2.6
79,950 - +0.2
79,993 - +0.8
80,176 - ABZR87_RS16630 0.11 +0.8
80,238 + ABZR87_RS16630 0.14 +0.4
80,487 - ABZR87_RS16630 0.23 +0.1
80,487 - ABZR87_RS16630 0.23 +1.1
80,580 + ABZR87_RS16630 0.27 -0.1
80,581 - ABZR87_RS16630 0.27 -0.8
80,581 - ABZR87_RS16630 0.27 +0.2
80,581 - ABZR87_RS16630 0.27 -0.3
80,581 - ABZR87_RS16630 0.27 -0.9
80,670 + ABZR87_RS16630 0.30 -0.6
80,671 - ABZR87_RS16630 0.30 -0.0
80,814 + ABZR87_RS16630 0.36 -0.3
80,865 - ABZR87_RS16630 0.38 +0.0
80,865 - ABZR87_RS16630 0.38 +0.6
80,865 - ABZR87_RS16630 0.38 +0.7
80,865 - ABZR87_RS16630 0.38 +0.0
80,902 - ABZR87_RS16630 0.39 -0.5
80,902 - ABZR87_RS16630 0.39 -0.3
81,000 + ABZR87_RS16630 0.43 -2.5
81,001 - ABZR87_RS16630 0.43 -0.5
81,001 - ABZR87_RS16630 0.43 -0.3
81,141 + ABZR87_RS16630 0.49 -1.7
81,142 - ABZR87_RS16630 0.49 +0.6
81,142 - ABZR87_RS16630 0.49 +2.1
81,142 - ABZR87_RS16630 0.49 -0.7
81,142 - ABZR87_RS16630 0.49 +0.4
81,307 + ABZR87_RS16630 0.55 +1.2
81,307 + ABZR87_RS16630 0.55 +0.1
81,308 - ABZR87_RS16630 0.55 -0.3
81,326 + ABZR87_RS16630 0.56 +1.1
81,570 + ABZR87_RS16630 0.65 -0.2
81,666 + ABZR87_RS16630 0.69 -0.4
81,666 + ABZR87_RS16630 0.69 -0.1
81,667 - ABZR87_RS16630 0.69 -0.1
81,667 - ABZR87_RS16630 0.69 +0.6
81,753 + ABZR87_RS16630 0.72 +0.5
81,754 - ABZR87_RS16630 0.72 +0.2
81,754 - ABZR87_RS16630 0.72 -0.7
81,771 + ABZR87_RS16630 0.73 -0.1
81,771 + ABZR87_RS16630 0.73 -0.0
81,772 - ABZR87_RS16630 0.73 +0.4
81,772 - ABZR87_RS16630 0.73 +1.0
81,772 - ABZR87_RS16630 0.73 -0.2
82,100 + ABZR87_RS16630 0.86 -0.8
82,134 + ABZR87_RS16630 0.87 -0.4
82,170 - ABZR87_RS16630 0.89 -0.3
82,203 + ABZR87_RS16630 0.90 -0.2
82,204 - ABZR87_RS16630 0.90 +0.8
82,204 - ABZR87_RS16630 0.90 +0.6
82,363 + -0.2
82,363 + -0.7
82,363 + +0.2
82,364 - +0.9
82,364 - -0.6
82,523 - -0.9
82,573 + -1.1
82,573 + -0.3
82,574 - -1.6
82,574 - +0.6
82,574 - -0.5
82,603 + +0.3
82,603 + -0.8
82,603 + -0.9
82,603 + +0.1
82,604 - +0.1
82,604 - +1.4
82,642 + -0.2
82,643 - +1.1
82,648 + +0.6
82,648 + -0.6
82,648 + +1.1
82,649 - -1.1
82,649 - +0.5
82,649 - -0.0
82,693 + ABZR87_RS16635 0.11 -0.3
82,693 + ABZR87_RS16635 0.11 +0.7
82,694 - ABZR87_RS16635 0.11 -0.2
82,806 - ABZR87_RS16635 0.19 +1.1
82,806 - ABZR87_RS16635 0.19 +0.0
82,807 + ABZR87_RS16635 0.19 -0.3
82,807 + ABZR87_RS16635 0.19 +1.8
82,807 + ABZR87_RS16635 0.19 -0.4
82,807 + ABZR87_RS16635 0.19 -0.3
82,807 + ABZR87_RS16635 0.19 +0.1
82,808 - ABZR87_RS16635 0.19 -1.3
82,808 - ABZR87_RS16635 0.19 -0.6
82,971 + ABZR87_RS16635 0.32 +0.1
82,972 - ABZR87_RS16635 0.32 -0.9
82,972 - ABZR87_RS16635 0.32 -0.1
82,990 + ABZR87_RS16635 0.33 +0.4
82,990 + ABZR87_RS16635 0.33 +0.2
82,990 + ABZR87_RS16635 0.33 -0.8
82,991 - ABZR87_RS16635 0.33 -0.3
82,991 - ABZR87_RS16635 0.33 -0.4
82,991 - ABZR87_RS16635 0.33 -0.1
82,991 - ABZR87_RS16635 0.33 -0.2
83,059 + ABZR87_RS16635 0.39 +0.1
83,059 + ABZR87_RS16635 0.39 -0.7
83,059 + ABZR87_RS16635 0.39 -0.1
83,059 + ABZR87_RS16635 0.39 -0.8
83,060 - ABZR87_RS16635 0.39 -0.2
83,071 + ABZR87_RS16635 0.40 -1.3
83,071 + ABZR87_RS16635 0.40 +1.0
83,071 + ABZR87_RS16635 0.40 +1.1
83,071 + ABZR87_RS16635 0.40 +0.1
83,071 + ABZR87_RS16635 0.40 +0.1
83,071 + ABZR87_RS16635 0.40 -0.7
83,072 - ABZR87_RS16635 0.40 -0.6
83,072 - ABZR87_RS16635 0.40 -0.8
83,072 - ABZR87_RS16635 0.40 +0.2
83,072 - ABZR87_RS16635 0.40 -0.3
83,072 - ABZR87_RS16635 0.40 +0.8
83,086 + ABZR87_RS16635 0.41 -0.9
83,086 + ABZR87_RS16635 0.41 +0.1
83,087 - ABZR87_RS16635 0.41 -0.8
83,087 - ABZR87_RS16635 0.41 -1.0
83,112 - ABZR87_RS16635 0.43 -0.2
83,227 + ABZR87_RS16635 0.52 -0.2
83,228 - ABZR87_RS16635 0.52 -0.1
83,228 - ABZR87_RS16635 0.52 +0.1
83,228 - ABZR87_RS16635 0.52 +0.8
83,368 + ABZR87_RS16635 0.62 -0.2
83,368 + ABZR87_RS16635 0.62 +0.2
83,368 + ABZR87_RS16635 0.62 +1.6
83,368 + ABZR87_RS16635 0.62 -0.0
83,422 + ABZR87_RS16635 0.67 -0.3
83,422 + ABZR87_RS16635 0.67 +0.3
83,422 + ABZR87_RS16635 0.67 -0.1
83,422 + ABZR87_RS16635 0.67 +0.4
83,422 + ABZR87_RS16635 0.67 +1.2
83,423 - ABZR87_RS16635 0.67 -0.6
83,423 - ABZR87_RS16635 0.67 +0.2
83,423 - ABZR87_RS16635 0.67 +0.4
83,441 - ABZR87_RS16635 0.68 -0.1

Or see this region's nucleotide sequence