Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11520 and ABZR87_RS11525 are separated by 70 nucleotides ABZR87_RS11525 and ABZR87_RS11530 are separated by 40 nucleotides ABZR87_RS11530 and ABZR87_RS11535 are separated by 7 nucleotides ABZR87_RS11535 and ABZR87_RS11540 are separated by 117 nucleotides
ABZR87_RS11520: ABZR87_RS11520 - ATP-binding cassette domain-containing protein, at 2,443,970 to 2,444,809
_RS11520
ABZR87_RS11525: ABZR87_RS11525 - molybdopterin-binding protein, at 2,444,880 to 2,445,095
_RS11525
ABZR87_RS11530: ABZR87_RS11530 - EAL domain-containing protein, at 2,445,136 to 2,446,020
_RS11530
ABZR87_RS11535: ABZR87_RS11535 - alpha/beta hydrolase, at 2,446,028 to 2,446,702
_RS11535
ABZR87_RS11540: ABZR87_RS11540 - sulfate ABC transporter permease subunit CysT, at 2,446,820 to 2,447,734
_RS11540
Position (kb)
2445
2446
2447 Strain fitness (log2 ratio)
-1
0
1 at 2444.808 kb on - strand at 2444.808 kb on - strand at 2444.850 kb on + strand at 2444.850 kb on + strand at 2444.850 kb on + strand at 2444.850 kb on + strand at 2444.850 kb on + strand at 2444.851 kb on - strand at 2444.851 kb on - strand at 2444.866 kb on + strand at 2444.866 kb on + strand at 2444.867 kb on - strand at 2444.867 kb on - strand at 2444.897 kb on + strand at 2444.898 kb on - strand at 2444.902 kb on + strand, within ABZR87_RS11525 at 2444.902 kb on + strand, within ABZR87_RS11525 at 2444.902 kb on + strand, within ABZR87_RS11525 at 2445.093 kb on + strand at 2445.093 kb on + strand at 2445.450 kb on + strand, within ABZR87_RS11530 at 2445.450 kb on + strand, within ABZR87_RS11530 at 2445.451 kb on - strand, within ABZR87_RS11530 at 2445.451 kb on - strand, within ABZR87_RS11530 at 2445.461 kb on - strand, within ABZR87_RS11530 at 2445.655 kb on + strand, within ABZR87_RS11530 at 2445.739 kb on + strand, within ABZR87_RS11530 at 2445.740 kb on - strand, within ABZR87_RS11530 at 2445.772 kb on - strand, within ABZR87_RS11530 at 2445.879 kb on + strand, within ABZR87_RS11530 at 2445.880 kb on - strand, within ABZR87_RS11530 at 2445.886 kb on + strand, within ABZR87_RS11530 at 2445.886 kb on + strand, within ABZR87_RS11530 at 2445.886 kb on + strand, within ABZR87_RS11530 at 2445.886 kb on + strand, within ABZR87_RS11530 at 2445.887 kb on - strand, within ABZR87_RS11530 at 2446.307 kb on - strand, within ABZR87_RS11535 at 2446.307 kb on - strand, within ABZR87_RS11535 at 2446.307 kb on - strand, within ABZR87_RS11535 at 2446.307 kb on - strand, within ABZR87_RS11535 at 2446.307 kb on - strand, within ABZR87_RS11535 at 2446.307 kb on - strand, within ABZR87_RS11535 at 2446.680 kb on + strand at 2446.680 kb on + strand at 2446.680 kb on + strand at 2446.694 kb on + strand at 2446.695 kb on - strand at 2446.697 kb on - strand at 2446.740 kb on + strand at 2446.858 kb on + strand at 2446.858 kb on + strand at 2446.859 kb on - strand at 2446.913 kb on + strand, within ABZR87_RS11540 at 2446.914 kb on - strand, within ABZR87_RS11540 at 2446.914 kb on - strand, within ABZR87_RS11540 at 2446.914 kb on - strand, within ABZR87_RS11540
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 2,444,808 - +0.9 2,444,808 - -0.2 2,444,850 + -0.2 2,444,850 + +0.6 2,444,850 + +0.4 2,444,850 + -0.1 2,444,850 + +0.3 2,444,851 - +0.4 2,444,851 - +0.6 2,444,866 + +1.6 2,444,866 + +0.4 2,444,867 - +0.2 2,444,867 - -0.2 2,444,897 + -1.5 2,444,898 - -0.6 2,444,902 + ABZR87_RS11525 0.10 +0.6 2,444,902 + ABZR87_RS11525 0.10 +0.7 2,444,902 + ABZR87_RS11525 0.10 +1.3 2,445,093 + -0.4 2,445,093 + +0.0 2,445,450 + ABZR87_RS11530 0.35 +0.5 2,445,450 + ABZR87_RS11530 0.35 -0.5 2,445,451 - ABZR87_RS11530 0.36 +0.2 2,445,451 - ABZR87_RS11530 0.36 -0.3 2,445,461 - ABZR87_RS11530 0.37 -0.5 2,445,655 + ABZR87_RS11530 0.59 -1.3 2,445,739 + ABZR87_RS11530 0.68 -0.5 2,445,740 - ABZR87_RS11530 0.68 -0.6 2,445,772 - ABZR87_RS11530 0.72 +0.5 2,445,879 + ABZR87_RS11530 0.84 -1.1 2,445,880 - ABZR87_RS11530 0.84 -1.6 2,445,886 + ABZR87_RS11530 0.85 -0.3 2,445,886 + ABZR87_RS11530 0.85 +1.3 2,445,886 + ABZR87_RS11530 0.85 +0.4 2,445,886 + ABZR87_RS11530 0.85 +1.6 2,445,887 - ABZR87_RS11530 0.85 +0.5 2,446,307 - ABZR87_RS11535 0.41 +0.3 2,446,307 - ABZR87_RS11535 0.41 +0.4 2,446,307 - ABZR87_RS11535 0.41 -0.9 2,446,307 - ABZR87_RS11535 0.41 -0.7 2,446,307 - ABZR87_RS11535 0.41 -1.1 2,446,307 - ABZR87_RS11535 0.41 -1.1 2,446,680 + -0.2 2,446,680 + +0.0 2,446,680 + -0.4 2,446,694 + -0.1 2,446,695 - +0.4 2,446,697 - -0.6 2,446,740 + -0.8 2,446,858 + -0.1 2,446,858 + -0.3 2,446,859 - -0.8 2,446,913 + ABZR87_RS11540 0.10 -0.5 2,446,914 - ABZR87_RS11540 0.10 -0.2 2,446,914 - ABZR87_RS11540 0.10 -0.5 2,446,914 - ABZR87_RS11540 0.10 +0.1
Or see this region's nucleotide sequence