Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10710 and ABZR87_RS10715 are separated by 126 nucleotides ABZR87_RS10715 and ABZR87_RS10720 are separated by 119 nucleotides ABZR87_RS10720 and ABZR87_RS10725 are separated by 64 nucleotides ABZR87_RS10725 and ABZR87_RS10730 are separated by 104 nucleotides
ABZR87_RS10710: ABZR87_RS10710 - glutamate--tRNA ligase, at 2,267,635 to 2,269,032
_RS10710
ABZR87_RS10715: ABZR87_RS10715 - tRNA-Ala, at 2,269,159 to 2,269,234
_RS10715
ABZR87_RS10720: ABZR87_RS10720 - tRNA-Glu, at 2,269,354 to 2,269,429
_RS10720
ABZR87_RS10725: ABZR87_RS10725 - tRNA-Asp, at 2,269,494 to 2,269,570
_RS10725
ABZR87_RS10730: ABZR87_RS10730 - MATE family efflux transporter, at 2,269,675 to 2,271,021
_RS10730
Position (kb)
2269
2270 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2269.153 kb on + strand at 2269.153 kb on + strand at 2269.617 kb on - strand at 2269.706 kb on + strand at 2269.706 kb on + strand at 2269.707 kb on - strand at 2269.820 kb on + strand, within ABZR87_RS10730 at 2269.820 kb on + strand, within ABZR87_RS10730 at 2269.837 kb on + strand, within ABZR87_RS10730 at 2269.837 kb on + strand, within ABZR87_RS10730 at 2269.838 kb on - strand, within ABZR87_RS10730 at 2269.838 kb on - strand, within ABZR87_RS10730 at 2269.859 kb on + strand, within ABZR87_RS10730 at 2269.860 kb on - strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.889 kb on + strand, within ABZR87_RS10730 at 2269.890 kb on - strand, within ABZR87_RS10730 at 2269.890 kb on - strand, within ABZR87_RS10730 at 2269.890 kb on - strand, within ABZR87_RS10730 at 2269.941 kb on - strand, within ABZR87_RS10730 at 2269.941 kb on - strand, within ABZR87_RS10730 at 2270.000 kb on + strand, within ABZR87_RS10730 at 2270.001 kb on - strand, within ABZR87_RS10730 at 2270.001 kb on - strand, within ABZR87_RS10730 at 2270.164 kb on + strand, within ABZR87_RS10730 at 2270.177 kb on + strand, within ABZR87_RS10730 at 2270.177 kb on + strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.178 kb on - strand, within ABZR87_RS10730 at 2270.225 kb on - strand, within ABZR87_RS10730 at 2270.225 kb on - strand, within ABZR87_RS10730
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 2,269,153 + -2.0 2,269,153 + -0.8 2,269,617 - +0.6 2,269,706 + -0.9 2,269,706 + +0.6 2,269,707 - -0.1 2,269,820 + ABZR87_RS10730 0.11 +0.5 2,269,820 + ABZR87_RS10730 0.11 -0.5 2,269,837 + ABZR87_RS10730 0.12 +1.6 2,269,837 + ABZR87_RS10730 0.12 +0.1 2,269,838 - ABZR87_RS10730 0.12 -0.1 2,269,838 - ABZR87_RS10730 0.12 -0.5 2,269,859 + ABZR87_RS10730 0.14 +0.1 2,269,860 - ABZR87_RS10730 0.14 +1.9 2,269,889 + ABZR87_RS10730 0.16 -1.0 2,269,889 + ABZR87_RS10730 0.16 -1.2 2,269,889 + ABZR87_RS10730 0.16 +0.0 2,269,889 + ABZR87_RS10730 0.16 +1.0 2,269,890 - ABZR87_RS10730 0.16 -1.2 2,269,890 - ABZR87_RS10730 0.16 +0.2 2,269,890 - ABZR87_RS10730 0.16 +0.8 2,269,941 - ABZR87_RS10730 0.20 -0.3 2,269,941 - ABZR87_RS10730 0.20 +0.7 2,270,000 + ABZR87_RS10730 0.24 -1.3 2,270,001 - ABZR87_RS10730 0.24 +1.9 2,270,001 - ABZR87_RS10730 0.24 -2.4 2,270,164 + ABZR87_RS10730 0.36 -0.3 2,270,177 + ABZR87_RS10730 0.37 +0.3 2,270,177 + ABZR87_RS10730 0.37 -0.1 2,270,178 - ABZR87_RS10730 0.37 -0.1 2,270,178 - ABZR87_RS10730 0.37 +0.4 2,270,178 - ABZR87_RS10730 0.37 +0.2 2,270,178 - ABZR87_RS10730 0.37 -0.9 2,270,178 - ABZR87_RS10730 0.37 +0.3 2,270,178 - ABZR87_RS10730 0.37 -0.7 2,270,225 - ABZR87_RS10730 0.41 +0.4 2,270,225 - ABZR87_RS10730 0.41 +0.0
Or see this region's nucleotide sequence